View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17661_low_12 (Length: 434)
Name: NF17661_low_12
Description: NF17661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17661_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 77 - 404
Target Start/End: Original strand, 40506620 - 40506948
Alignment:
| Q |
77 |
catgtatcaagttctcttgtagtatgctggctgaagtgaagaataaaaacagtaattgta-aaaaataccattgttatcggcgtttgtttgagattgatc |
175 |
Q |
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| T |
40506620 |
catgtatcaagttctcttgtagtatgctggctgaagtgaagaataaaaacagtaattgtagaaaaataccattgttatcggcgtttgtttgagattgatc |
40506719 |
T |
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| Q |
176 |
gtcccttttggaacatactacaaatttgaaggggaaataggaatggaaagaagaggatgataaagtttgggttggtgaagagaaacgatgggatataaaa |
275 |
Q |
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| T |
40506720 |
gtcccttttggaacatactacaaatttgaaggggaaataggaatggaaagaagaggatgataaagtttgggttggtgaagagaaacgatgggatataaaa |
40506819 |
T |
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| Q |
276 |
gttgtgggtattgaaatgtgtgtgtgaatatccatttcaaagctaatcaagaagattgcaatttcgttcttccttcggctcaactggaacttcttcctta |
375 |
Q |
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| T |
40506820 |
gttgtgggtattgaaatgtgtgtgtgaatatccatttcaaagctaatcaagaagattgaaatttcgttcttccttcggctcaactggaacttcttcctta |
40506919 |
T |
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| Q |
376 |
tcctttgcgaatctcagattttcacatac |
404 |
Q |
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| T |
40506920 |
tcctttgcgaatctcagattttcacatac |
40506948 |
T |
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