View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17661_low_13 (Length: 426)
Name: NF17661_low_13
Description: NF17661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17661_low_13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 8 - 410
Target Start/End: Complemental strand, 30669690 - 30669302
Alignment:
| Q |
8 |
ataatactagaagatgactagtgttaataatactgagacatgatcacagagttcttccataaaattacatttttctacattcttaatttaaacaagttgt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
30669690 |
ataatactagaagatgactagtgttaataatactgagacatgatcacagagttctt----------acatttttctacattcttaatttaaacaagttgt |
30669601 |
T |
|
| Q |
108 |
attatcaatccaaacatagcctaacctaagaggagatacgtggtcgaagttgtgacattgtcaaacaattctcaactcaaggttcggatatccagctcga |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30669600 |
attatcaatccaaacatagcctaacctaagaggagatacttggtcgaagttgtgacattgtcaaacaattctcaactcaaggttcggatatccagctcga |
30669501 |
T |
|
| Q |
208 |
gttttgttgcgttcaaaaagatcttgaagtgcttcaacaaactgactatgtactttagcaacctgaaacaatgtgaatgtgataaaagagtttaaatttt |
307 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
30669500 |
gttttgttgcattcaaaaagatcttgaagtgcttcaacaaactgactatgtactttagcaacctgaaacaatgcgaatgtgataaaagagtttaaatttt |
30669401 |
T |
|
| Q |
308 |
ttagaaattcgtggatcaaatttaacttaaaggatgtaggatggtagtgnnnnnnnnnnnncctcctcaggcgtcggtttcggatttttctcaagctcaa |
407 |
Q |
| |
|
||||||||||||| || | ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30669400 |
ttagaaattcgtgaatactacttaacttaaagtgtgtaggatggtagtg----tatatatacctcctcaggcgtcggtttcggatttttctcaagctcaa |
30669305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 168 - 276
Target Start/End: Complemental strand, 30662944 - 30662836
Alignment:
| Q |
168 |
tcaaacaattctcaactcaaggttcggatatccagctcgagttttgttgcgttcaaaaagatcttgaagtgcttcaacaaactgactatgtactttagca |
267 |
Q |
| |
|
|||||||||| ||||||||||||| | | |||||||| |||| |||| ||||||||||| |||||||||||||||||||||| |||||||||||| ||| |
|
|
| T |
30662944 |
tcaaacaattttcaactcaaggtttgtacatccagcttgagtcttgtgtcgttcaaaaagttcttgaagtgcttcaacaaactcactatgtactttggca |
30662845 |
T |
|
| Q |
268 |
acctgaaac |
276 |
Q |
| |
|
|||| |||| |
|
|
| T |
30662844 |
acctaaaac |
30662836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 168 - 271
Target Start/End: Original strand, 13194417 - 13194520
Alignment:
| Q |
168 |
tcaaacaattctcaactcaaggttcggatatccagctcgagttttgttgcgttcaaaaagatcttgaagtgcttcaacaaactgactatgtactttagca |
267 |
Q |
| |
|
|||||||| | |||||| |||||| | |||||||||| |||| |||| |||||||||||||||||||||||||||| ||||| ||| |||||||| ||| |
|
|
| T |
13194417 |
tcaaacaaatttcaacttaaggtttgtatatccagcttgagtcttgtgtcgttcaaaaagatcttgaagtgcttcaagaaactcactgtgtactttggca |
13194516 |
T |
|
| Q |
268 |
acct |
271 |
Q |
| |
|
|||| |
|
|
| T |
13194517 |
acct |
13194520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 259
Target Start/End: Original strand, 10110607 - 10110698
Alignment:
| Q |
168 |
tcaaacaattctcaactcaaggttcggatatccagctcgagttttgttgcgttcaaaaagatcttgaagtgcttcaacaaactgactatgta |
259 |
Q |
| |
|
|||||||||| | |||||||| || ||||| ||||| |||| ||||| ||||| || ||||||||||||||||| ||||||||||| |||| |
|
|
| T |
10110607 |
tcaaacaatttttaactcaagctttggatagccagcccgagctttgtgccgttcgaagagatcttgaagtgcttccacaaactgactgtgta |
10110698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University