View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17661_low_15 (Length: 404)
Name: NF17661_low_15
Description: NF17661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17661_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 354; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 16 - 392
Target Start/End: Original strand, 37159137 - 37159516
Alignment:
| Q |
16 |
cttcaagcatttcaccaccaacgttgtcaaagtaaacatcgataccatcaggaaaatacctgcaaaattctagtctata---ttaggaagttaacttaat |
112 |
Q |
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| T |
37159137 |
cttcaagcatttcaccaccaacgttgtcaaagtaaacatcgataccatcaggaaaatacctgcaaaattctagtctataatattaggaagttaacttaat |
37159236 |
T |
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| Q |
113 |
tttctaaaactaaaatatttaactagatccttctgagtatgccaatttatgtcatgaatctttctgagtgcaaatttatacttcaaaattttcacatgga |
212 |
Q |
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| T |
37159237 |
tttctaaaactaaaatatttaactagatccttctgagtatgccaatttatgtcatgaatctttctgagtgcaaatttatacttcaaaattttcacatgga |
37159336 |
T |
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| Q |
213 |
tggttgctttatacatggcggtccaattcttatgcaactaaagcaagggtttcaggcccatgagcattctactgaacatatattaaaaaactgagtttag |
312 |
Q |
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| T |
37159337 |
tggttgctttatacatggcggtccaattcttatgcaactaaagcaagggtttcaggcctatgagcattctactgaacatatattaaaaaactgagtttag |
37159436 |
T |
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| Q |
313 |
taaacaaaaaaggcatatggtctaacagttgaggtctctttttcttttcggtttctcataggttccctccatcacaggtt |
392 |
Q |
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| T |
37159437 |
taaacaaaaaaggtatatggtctaacagttgaggtctctttttcttttcggtttctcataggttccctccatcagaggtt |
37159516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 37152941 - 37153020
Alignment:
| Q |
16 |
cttcaagcatttcaccaccaacgttgtcaaagtaaacatcgataccatcaggaaaatacctgcaaaattctagtctatat |
95 |
Q |
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| T |
37152941 |
cttcaagcattttaccaccaacattgtcaaggtaaacatcaataccatcaggaaaatacctgcaaaattctagtctatat |
37153020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 37146880 - 37146948
Alignment:
| Q |
21 |
agcatttcaccaccaacgttgtcaaagtaaacatcgataccatcaggaaaatacctgcaaaattctagt |
89 |
Q |
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||||||| ||||||||| ||||||| ||||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
37146880 |
agcattttaccaccaacattgtcaaggtaaacatcaataccatcagggaaatacctgcaaaattctagt |
37146948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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