View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17661_low_17 (Length: 400)
Name: NF17661_low_17
Description: NF17661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17661_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 29677905 - 29678284
Alignment:
| Q |
1 |
tagattttggatttgctatgcgattttctatataaatcattggtgatttgcttagacaatgaactgatcttgacgagaagaactgtcggtcaaaaatatg |
100 |
Q |
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| T |
29677905 |
tagatttaggatttgctatgcgattttctatataaatcattggtgatttgcttagacaatgaactgatcttgacgagaagaactgttggtcaaaaatatg |
29678004 |
T |
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| Q |
101 |
aagcaaagtaaacttcaaaccactaaagaagcgaaatttatatttgctttgttgggtacttggcctcgtgttactttgcgtgcaagtcctgctaatccaa |
200 |
Q |
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| T |
29678005 |
aagcaaagtaaacttcaaaccactaaagaagcgaaatttatatttgctttgttgggtacttggcctcgtgttactttgcgtgcaagtcctgctaatccaa |
29678104 |
T |
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| Q |
201 |
ttttaaaataaaagcataattgaagcactctcgctgtagttacttctgagtttccctttttctttgttgactggtacttttgaaacatgcctactgcctg |
300 |
Q |
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| T |
29678105 |
ttttaaaataaaagcataattgaagcactcttgctgtagttacttctgagtttccc-ttttctttgttgactggtacttttgaaacatgcctactgcctg |
29678203 |
T |
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| Q |
301 |
aagtttatttggacaactgtttatcagattgagattgataaacacttgttcaaacatgcatggtagtcattaagtttttca |
381 |
Q |
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| T |
29678204 |
aagtttatttggacaactgtttatcagattgagattgataaacacttgttcaaacatgcatggtagtcattaagtttttca |
29678284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 235 - 352
Target Start/End: Original strand, 29677730 - 29677846
Alignment:
| Q |
235 |
tgtagttacttctgagtttccctttttctttgttgactggtacttttgaaacatgcctactgcctgaagtttatttggacaactgtttatcagattgaga |
334 |
Q |
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| T |
29677730 |
tgtagttaattttgagtttcctttgtt-ttagttgattggtacttttgaaatatgcttactgcctggagtctctttggaaaacactttattagattgaga |
29677828 |
T |
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| Q |
335 |
ttgataaacacttgttca |
352 |
Q |
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| T |
29677829 |
ttgataaacgcttcttca |
29677846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 345 - 380
Target Start/End: Complemental strand, 15524634 - 15524599
Alignment:
| Q |
345 |
cttgttcaaacatgcatggtagtcattaagtttttc |
380 |
Q |
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| T |
15524634 |
cttgttcaaacatgcatggtaatcattaagtttttc |
15524599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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