View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17661_low_19 (Length: 377)
Name: NF17661_low_19
Description: NF17661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17661_low_19 |
 | |
|
| [»] scaffold0200 (1 HSPs) |
| | |
|
| [»] scaffold0009 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 20)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 123 - 358
Target Start/End: Complemental strand, 5497759 - 5497524
Alignment:
| Q |
123 |
aaaaacagattttaaattccctaaaaaacattcataaaatgatcattaatattgtttactaaaagttccacaattnnnnnnncaaacaaaatatttgcac |
222 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||| |
|
|
| T |
5497759 |
aaaaacagattttaaattccctaaaaaaaattcataaaatgatcattaatattgtttactaaaagttccacaattaaaaaaacaaaaaaaatatttccac |
5497660 |
T |
|
| Q |
223 |
aaataaagcgtgatggcaacctctaccaatccacatgcagccattgcttttaggaagcacactctctcttgtcaaattttcctcttgaacaagtggctct |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5497659 |
aaataaagcgtgatggcaacctctaccaatccacatgcagccattgcttttaggaagcacactctctcttgtcaaattttcctcttgaacaagtggctct |
5497560 |
T |
|
| Q |
323 |
ttgcgttggtccagcagcttctaacgtggaagtact |
358 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5497559 |
ttgcgttggtccagcagcttctaaagtggaagtact |
5497524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 13876887 - 13876967
Alignment:
| Q |
16 |
attaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||| || |||| ||||| |||| | ||||||||| |||||||| |
|
|
| T |
13876887 |
attaaatacacaaatactcaatgattgatcatttaacttcaccataaaagtcattttcataacttcaccatagaattttcc |
13876967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 95
Target Start/End: Complemental strand, 10922771 - 10922724
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttc |
95 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
10922771 |
ttaacttcaccaaaaaaatcattctcatgatttcaccataaaattttc |
10922724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 16127600 - 16127539
Alignment:
| Q |
16 |
attaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatga |
77 |
Q |
| |
|
|||||||||||||||| ||||| ||||| |||||||||||| ||||||| ||||| |||||| |
|
|
| T |
16127600 |
attaaatacacaaatgatcaatgattgaccatttaacttcaccagaaaagtcattttcatga |
16127539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 10758264 - 10758308
Alignment:
| Q |
12 |
atgaattaaatacacaaatgctcaataattgatcatttaacttca |
56 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
10758264 |
atgaattaaatacacaaatgctcaatgattgaccatttaacttca |
10758308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 16132555 - 16132475
Alignment:
| Q |
16 |
attaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| || |||| ||| ||| ||| ||||||||| |||||||| |
|
|
| T |
16132555 |
attaaatacacaaatgctcaataatttgccatttaacttcaccaaaaaagtcaatctattgacttcaccatagaattttcc |
16132475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 25943278 - 25943218
Alignment:
| Q |
16 |
attaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatg |
76 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||| |||||| ||||| ||||| |
|
|
| T |
25943278 |
attaaataaactaatgctcaataattgatcatttaacttcactagaaaattcattatcatg |
25943218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 103
Target Start/End: Complemental strand, 23999391 - 23999336
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttccaagatta |
103 |
Q |
| |
|
||||||||| || |||||||||||| |||| |||||||||||||||||||| |||| |
|
|
| T |
23999391 |
ttaacttcaccaaaaaaatcattcttatgacttcaccataaaattttccaatatta |
23999336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 102
Target Start/End: Complemental strand, 2959792 - 2959738
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttccaagatt |
102 |
Q |
| |
|
||||||||||||||||| ||||| |||||| ||||||||| |||||||| ||||| |
|
|
| T |
2959792 |
ttaacttcatcagaaaagtcattttcatgacttcaccatagaattttcctagatt |
2959738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 34491473 - 34491548
Alignment:
| Q |
16 |
attaaatacacaaatgctcaataattgatcat----ttaacttcatcagaaaaatcattctcatgatttcaccata |
87 |
Q |
| |
|
|||||||||||||||| | ||| ||||||||| ||||||||||||||||||| |||||||| | ||||||||| |
|
|
| T |
34491473 |
attaaatacacaaatgtttaatgattgatcatagaattaacttcatcagaaaaattattctcatcacttcaccata |
34491548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 27227609 - 27227658
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcca |
97 |
Q |
| |
|
||||||||| || ||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
27227609 |
ttaacttcaccaaaaaaatcattctcatgacttcaccatagaattttcca |
27227658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 1547331 - 1547283
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
||||||||| ||||||| |||||||||||| ||||||||| |||||||| |
|
|
| T |
1547331 |
ttaacttcaccagaaaagtcattctcatgacttcaccatagaattttcc |
1547283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 22170798 - 22170750
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
|||||||||| |||||| ||||| |||||||||||||||| |||||||| |
|
|
| T |
22170798 |
ttaacttcattagaaaagtcattttcatgatttcaccatagaattttcc |
22170750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 46 - 97
Target Start/End: Complemental strand, 43579292 - 43579241
Alignment:
| Q |
46 |
atttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcca |
97 |
Q |
| |
|
||||||||||| |||||| |||||||||||| ||||||||| ||||||||| |
|
|
| T |
43579292 |
atttaacttcactagaaaagtcattctcatgacttcaccatagaattttcca |
43579241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 27118410 - 27118328
Alignment:
| Q |
16 |
attaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaattttccaa |
98 |
Q |
| |
|
|||||||||| |||||||| || ||| | ||||||||| |||| |||| ||||| |||||| || | ||||||||||||||| |
|
|
| T |
27118410 |
attaaatacataaatgctccatgattaactatttaactttatcaaaaaagtcattttcatgactttatcataaaattttccaa |
27118328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 47682625 - 47682675
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttccaa |
98 |
Q |
| |
|
||||||||| || |||| ||| |||||||| |||||||||||||||||||| |
|
|
| T |
47682625 |
ttaacttcaccaaaaaagtcactctcatgacttcaccataaaattttccaa |
47682675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 97
Target Start/End: Complemental strand, 38823258 - 38823209
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcca |
97 |
Q |
| |
|
||||||| | ||||||| |||||||||||| ||||||||| ||||||||| |
|
|
| T |
38823258 |
ttaacttaaccagaaaagtcattctcatgacttcaccatagaattttcca |
38823209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 11742482 - 11742530
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
||||||||| ||||||| |||||||||| | ||||| |||||||||||| |
|
|
| T |
11742482 |
ttaacttcaccagaaaagtcattctcataacttcacgataaaattttcc |
11742530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 95
Target Start/End: Complemental strand, 14758082 - 14758038
Alignment:
| Q |
51 |
acttcatcagaaaaatcattctcatgatttcaccataaaattttc |
95 |
Q |
| |
|
|||||| ||||||| |||||||||||| |||||| |||||||||| |
|
|
| T |
14758082 |
acttcaccagaaaagtcattctcatgacttcaccgtaaaattttc |
14758038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 16415689 - 16415641
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
||||||||| ||||||| |||||||||||| |||||| || |||||||| |
|
|
| T |
16415689 |
ttaacttcaccagaaaagtcattctcatgacttcaccttagaattttcc |
16415641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 29)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 7 - 96
Target Start/End: Original strand, 40640593 - 40640682
Alignment:
| Q |
7 |
gtgagatgaattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
|||| ||| |||||||||||||||||||||| ||||| |||||||||||| ||||||| |||||||||||| ||||||||| |||||||| |
|
|
| T |
40640593 |
gtgacatggattaaatacacaaatgctcaatgattgaccatttaacttcaccagaaaagtcattctcatgacttcaccatagaattttcc |
40640682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 47930634 - 47930714
Alignment:
| Q |
16 |
attaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
|||||||||||||||| ||||| |||| ||||||||||||| ||||||||||||| |||||| ||||||||| |||||||| |
|
|
| T |
47930634 |
attaaatacacaaatgttcaatgattggtcatttaacttcaccagaaaaatcattttcatgacttcaccatagaattttcc |
47930714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 19606879 - 19606961
Alignment:
| Q |
13 |
tgaattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaattttc |
95 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||||||| ||||||| ||||| | || | ||||||||| ||||||| |
|
|
| T |
19606879 |
tgaattaaatacacaaatgctcaatcattggtcatttaacttcaccagaaaagtcatttttataacttcaccatagaattttc |
19606961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 45879466 - 45879546
Alignment:
| Q |
16 |
attaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||| | ||||||| |||||||||||| |||| |||| |||||||| |
|
|
| T |
45879466 |
attaaatacacaaatgctcaatgattggccatttaactttaccagaaaagtcattctcatgacttcagcatagaattttcc |
45879546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 38392596 - 38392673
Alignment:
| Q |
16 |
attaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaattt |
93 |
Q |
| |
|
|||||||||||||||| ||||| | ||| |||||||||||| || |||| |||||||||||| ||||||||| ||||| |
|
|
| T |
38392596 |
attaaatacacaaatgttcaatgactgaccatttaacttcaccaaaaaagtcattctcatgacttcaccatataattt |
38392673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 32180714 - 32180794
Alignment:
| Q |
15 |
aattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaattttc |
95 |
Q |
| |
|
||||||||||||||||||||||| ||| | |||||||||||| |||||| |||||||||| | |||||| || ||||||| |
|
|
| T |
32180714 |
aattaaatacacaaatgctcaatgattaaccatttaacttcactagaaaagtcattctcataacttcaccgtacaattttc |
32180794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 42204426 - 42204341
Alignment:
| Q |
16 |
attaaatacacaaatgctcaataattgatcat----ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcca |
97 |
Q |
| |
|
||||||||||||||||||||||||| | |||| ||||||||||||||||| ||||||||| || ||||| ||| ||||||||| |
|
|
| T |
42204426 |
attaaatacacaaatgctcaataataggtcatatggttaacttcatcagaaaagtcattctcacgacttcacgatagaattttcca |
42204341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 48 - 94
Target Start/End: Original strand, 53818509 - 53818555
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaatttt |
94 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
53818509 |
ttaacttcaccagaaaaatcattctcatgacttcaccataaaatttt |
53818555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 97
Target Start/End: Complemental strand, 4015499 - 4015450
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcca |
97 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||| ||||||||| |
|
|
| T |
4015499 |
ttaacttcatcagaaaagtcattctcatgacttcaccatagaattttcca |
4015450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 49359596 - 49359677
Alignment:
| Q |
16 |
attaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcca |
97 |
Q |
| |
|
|||||||||||||||| ||||| |||| |||||||||||| | |||| ||||| |||||| ||||||||| ||||||||| |
|
|
| T |
49359596 |
attaaatacacaaatgttcaatgattggccatttaacttcacaaaaaaagtcattttcatgacttcaccatagaattttcca |
49359677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 26000612 - 26000525
Alignment:
| Q |
7 |
gtgagatgaattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaattttc |
95 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||| |||||||||| || | || |||||| ||| |||| | || |||||||||||||| |
|
|
| T |
26000612 |
gtgacatgaattaaatacacaaatgttcaataatcgatcatttaattttacca-aaaaattattttcataactttaccataaaattttc |
26000525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 7568678 - 7568753
Alignment:
| Q |
7 |
gtgagatgaattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttca |
82 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||| | |||||||||||| || |||| | ||| |||||| |||| |
|
|
| T |
7568678 |
gtgacatgaattaaatacacaaatgctcaatgatttaccatttaacttcaccaaaaaagtaattttcatgacttca |
7568753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 94
Target Start/End: Complemental strand, 44880880 - 44880794
Alignment:
| Q |
7 |
gtgagatgaattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaatttt |
94 |
Q |
| |
|
|||| ||| |||||||||| ||||| ||||| ||||| ||||||||||||| | |||| ||||| |||| |||||||| ||||||||| |
|
|
| T |
44880880 |
gtgacatggattaaatacataaatgttcaatgattgaccatttaacttcatta-aaaagtcattttcataatttcaccgtaaaatttt |
44880794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 22451004 - 22450959
Alignment:
| Q |
51 |
acttcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
22451004 |
acttcaccagaaaaatcattctcatgacttcaccatagaattttcc |
22450959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 53811976 - 53812025
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcca |
97 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||| || ||||||||| |
|
|
| T |
53811976 |
ttaacttcatcagaaaagtcattctcatgacttcaccgtagaattttcca |
53812025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 11466863 - 11466815
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
||||||||||||||||| ||||||||| || ||||||||| |||||||| |
|
|
| T |
11466863 |
ttaacttcatcagaaaagtcattctcaagacttcaccatagaattttcc |
11466815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 18272188 - 18272271
Alignment:
| Q |
12 |
atgaattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
|||||||||||||||||||| ||||| |||| | ||||| |||| |||||| |||||||||||| |||||| || |||||||| |
|
|
| T |
18272188 |
atgaattaaatacacaaatgttcaatgattggg-agttaacgtcattagaaaagtcattctcatgacttcaccgtataattttcc |
18272271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 48354980 - 48354932
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
||||||||| || ||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
48354980 |
ttaacttcaccataaaaatcattctcatgacttcaccatagaattttcc |
48354932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 4556622 - 4556543
Alignment:
| Q |
15 |
aattaaatacacaaatgctcaataattgatcat-ttaacttcatcagaaaaatcattctcatgatttcaccataaaattt |
93 |
Q |
| |
|
|||||||||||||||| |||||| |||| |||| |||||||| |||||| ||||| |||||| ||||||||| ||||| |
|
|
| T |
4556622 |
aattaaatacacaaatactcaatgattggtcatagtaacttcacgagaaaagtcattttcatgacttcaccatagaattt |
4556543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 48 - 95
Target Start/End: Original strand, 11835743 - 11835790
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttc |
95 |
Q |
| |
|
||||||||| || ||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
11835743 |
ttaacttcaccaaaaaaatcattctcatgacttcaccatagaattttc |
11835790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 48 - 95
Target Start/End: Complemental strand, 25579778 - 25579731
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttc |
95 |
Q |
| |
|
||||||||| |||||||||||||||||| | || |||||||||||||| |
|
|
| T |
25579778 |
ttaacttcaccagaaaaatcattctcataacttaaccataaaattttc |
25579731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 48 - 95
Target Start/End: Complemental strand, 29163886 - 29163839
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttc |
95 |
Q |
| |
|
||||||||| ||||||||||||| | |||| ||||||||||||||||| |
|
|
| T |
29163886 |
ttaacttcaccagaaaaatcattttaatgacttcaccataaaattttc |
29163839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 48 - 99
Target Start/End: Complemental strand, 37203106 - 37203055
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttccaag |
99 |
Q |
| |
|
|||||||||||| |||||||||| | |||| ||||||||| ||||||||||| |
|
|
| T |
37203106 |
ttaacttcatcaaaaaaatcatttttatgacttcaccatagaattttccaag |
37203055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 51213118 - 51213168
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttccaa |
98 |
Q |
| |
|
||||||||| || |||| |||||||||||| ||||||||| |||||||||| |
|
|
| T |
51213118 |
ttaacttcaccaaaaaagtcattctcatgacttcaccatagaattttccaa |
51213168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 20373433 - 20373482
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcca |
97 |
Q |
| |
|
||||||||| || |||||||||||| |||| ||||| ||||||||||||| |
|
|
| T |
20373433 |
ttaacttcaccaaaaaaatcattcttatgacttcactataaaattttcca |
20373482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 21193645 - 21193597
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
||||||||| ||||||| |||||||||||| || |||||| |||||||| |
|
|
| T |
21193645 |
ttaacttcaccagaaaagtcattctcatgactttaccatagaattttcc |
21193597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 26941397 - 26941445
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
||||||||| || |||||||||||| |||| ||||||||| |||||||| |
|
|
| T |
26941397 |
ttaacttcaccaaaaaaatcattcttatgacttcaccatagaattttcc |
26941445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 39282684 - 39282644
Alignment:
| Q |
56 |
atcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
||||||||||||||| |||||| ||||||||| |||||||| |
|
|
| T |
39282684 |
atcagaaaaatcattttcatgacttcaccatagaattttcc |
39282644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 55343421 - 55343469
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
||||||||||||||||| ||||| || ||| ||||||||| |||||||| |
|
|
| T |
55343421 |
ttaacttcatcagaaaagtcattttcgtgacttcaccatagaattttcc |
55343469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 24)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 13 - 96
Target Start/End: Complemental strand, 2704595 - 2704512
Alignment:
| Q |
13 |
tgaattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||||||| ||||||| ||||| |||||| |||||||||||||||||| |
|
|
| T |
2704595 |
tgaattaaatacacaaatattcaatgattgatcatttaacttcaccagaaaagtcattttcatgacttcaccataaaattttcc |
2704512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 98
Target Start/End: Complemental strand, 17612423 - 17612333
Alignment:
| Q |
7 |
gtgagatgaattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaattttccaa |
98 |
Q |
| |
|
|||| ||||||||| |||||||||||| ||| ||||| ||||||||||||| | ||||||||||||||||| ||||||||| ||||| |||| |
|
|
| T |
17612423 |
gtgacatgaattaa-tacacaaatgcttaatgattgaccatttaacttcattaaaaaaatcattctcatgacttcaccatagaatttaccaa |
17612333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 2266824 - 2266902
Alignment:
| Q |
16 |
attaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaatttt |
94 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||||||| |||||| ||||| |||||| ||||||||| |||||| |
|
|
| T |
2266824 |
attaaatacacaaatgctcaatgattgacgatttaacttcactagaaaagtcattatcatgacttcaccatataatttt |
2266902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 12 - 94
Target Start/End: Original strand, 20097451 - 20097537
Alignment:
| Q |
12 |
atgaattaaatacacaaatgctcaataattgatcat----ttaacttcatcagaaaaatcattctcatgatttcaccataaaatttt |
94 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||| ||||||||| ||||||| |||||||||||| ||||||||| |||||| |
|
|
| T |
20097451 |
atgaattaaatacacaaatgcggaatgattgatcatagggttaacttcaccagaaaagtcattctcatgacttcaccatagaatttt |
20097537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 51204672 - 51204580
Alignment:
| Q |
7 |
gtgagatgaattaaatacacaaatgctcaataattgatcat----ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttc |
95 |
Q |
| |
|
|||| ||| |||||||||||||| ||||||||||||||||| ||||||||| ||||||| ||||| | |||| ||||||||| ||||||| |
|
|
| T |
51204672 |
gtgacatggattaaatacacaaaagctcaataattgatcatagggttaacttcaccagaaaagtcatttttatgacttcaccatagaattttc |
51204580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 97
Target Start/End: Complemental strand, 38811861 - 38811812
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcca |
97 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
38811861 |
ttaacttcaccagaaaaatcattctcatgacttcaccatagaattttcca |
38811812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 9743668 - 9743590
Alignment:
| Q |
16 |
attaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaatttt |
94 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||| |||| || |||| ||||| ||||| || |||||| |||||| |
|
|
| T |
9743668 |
attaaatacacaaatgttcaataattggtcatttaatttcaccaaaaaagtcatttacatgactttaccatagaatttt |
9743590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 33255570 - 33255501
Alignment:
| Q |
25 |
acaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaatttt |
94 |
Q |
| |
|
|||||||||||||||||| |||||||||||| || |||| | |||||| ||| ||||||||| |||||| |
|
|
| T |
33255570 |
acaaatgctcaataattggccatttaacttcaccaaaaaagtgattctcgtgacttcaccatataatttt |
33255501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 38011899 - 38011854
Alignment:
| Q |
51 |
acttcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
38011899 |
acttcaccagaaaagtcattctcatgatttcaccatagaattttcc |
38011854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 38812260 - 38812308
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
||||||||| ||||||| |||||||||||| ||||||||| |||||||| |
|
|
| T |
38812260 |
ttaacttcaccagaaaagtcattctcatgacttcaccatagaattttcc |
38812308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 55478058 - 55478106
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
||||||||| || ||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
55478058 |
ttaacttcaccaaaaaaatcattctcatgacttcaccatagaattttcc |
55478106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 48 - 95
Target Start/End: Complemental strand, 4598041 - 4597994
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttc |
95 |
Q |
| |
|
||||||||| ||||||| ||||||| |||| ||||||||||||||||| |
|
|
| T |
4598041 |
ttaacttcaccagaaaagtcattctaatgacttcaccataaaattttc |
4597994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 27396664 - 27396618
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaatttt |
94 |
Q |
| |
|
||||||||| ||||||| |||||||||||| ||||||||| |||||| |
|
|
| T |
27396664 |
ttaacttcaccagaaaagtcattctcatgacttcaccatagaatttt |
27396618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 97
Target Start/End: Original strand, 28003152 - 28003198
Alignment:
| Q |
51 |
acttcatcagaaaaatcattctcatgatttcaccataaaattttcca |
97 |
Q |
| |
|
|||||| ||||||| |||||||||||| ||||||||| ||||||||| |
|
|
| T |
28003152 |
acttcaccagaaaagtcattctcatgacttcaccatagaattttcca |
28003198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 94
Target Start/End: Original strand, 34948260 - 34948306
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaatttt |
94 |
Q |
| |
|
|||||||| ||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
34948260 |
ttaacttcgccagaaaagtcattctcatgacttcaccataaaatttt |
34948306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 47236912 - 47236866
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaatttt |
94 |
Q |
| |
|
||||||| | || |||||||||| ||||||||||||||||||||||| |
|
|
| T |
47236912 |
ttaacttaaccaaaaaaatcattttcatgatttcaccataaaatttt |
47236866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 90
Target Start/End: Original strand, 52195645 - 52195687
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaa |
90 |
Q |
| |
|
||||||||||||||||| |||||||||| | |||||||||||| |
|
|
| T |
52195645 |
ttaacttcatcagaaaagtcattctcataacttcaccataaaa |
52195687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 52516645 - 52516599
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaatttt |
94 |
Q |
| |
|
||||||||| || |||| |||||||||||| |||||||||||||||| |
|
|
| T |
52516645 |
ttaacttcaccataaaagtcattctcatgacttcaccataaaatttt |
52516599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 53337576 - 53337625
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcca |
97 |
Q |
| |
|
||||||| ||||||||||||||| |||||| || |||||| ||||||||| |
|
|
| T |
53337576 |
ttaactttatcagaaaaatcattatcatgactttaccatagaattttcca |
53337625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 55241267 - 55241316
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcca |
97 |
Q |
| |
|
||||||||| |||||| |||||||||||| ||||||||| ||||||||| |
|
|
| T |
55241267 |
ttaacttcactagaaaagtcattctcatgacttcaccatagaattttcca |
55241316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 3042659 - 3042611
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
||||||||| || |||||||||| | |||||||||||||| |||||||| |
|
|
| T |
3042659 |
ttaacttcaccaaaaaaatcatttttatgatttcaccatagaattttcc |
3042611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 4205164 - 4205116
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
||||||||||||||||| ||||| || ||| ||||||||| |||||||| |
|
|
| T |
4205164 |
ttaacttcatcagaaaagtcattttcctgacttcaccatagaattttcc |
4205116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 37663902 - 37663950
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
|||||||||||| |||| ||||||| |||| ||||||||| |||||||| |
|
|
| T |
37663902 |
ttaacttcatcaaaaaagtcattcttatgacttcaccatagaattttcc |
37663950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 42199777 - 42199729
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
||||||||| || |||||||||||| |||||||||||||| | |||||| |
|
|
| T |
42199777 |
ttaacttcaccaaaaaaatcattcttatgatttcaccatagatttttcc |
42199729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 19)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 7 - 96
Target Start/End: Complemental strand, 4902429 - 4902340
Alignment:
| Q |
7 |
gtgagatgaattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
|||| ||| |||||||||| ||||||||||||||||||||||||| |||| || |||||| ||| |||||| |||||||||||||||||| |
|
|
| T |
4902429 |
gtgacatggattaaatacataaatgctcaataattgatcatttaaattcaccaaaaaaattattttcatgacttcaccataaaattttcc |
4902340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 7 - 97
Target Start/End: Original strand, 23402330 - 23402420
Alignment:
| Q |
7 |
gtgagatgaattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcca |
97 |
Q |
| |
|
|||| |||||||||||||||| ||| ||||| ||||| |||||||||||| ||||||| |||||||||||| ||| ||||| ||||||||| |
|
|
| T |
23402330 |
gtgacatgaattaaatacacagatgttcaatgattgaccatttaacttcaccagaaaagtcattctcatgacttcgccatagaattttcca |
23402420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 22955271 - 22955351
Alignment:
| Q |
7 |
gtgagatgaattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccata |
87 |
Q |
| |
|
|||| ||| |||||||||||||||| ||||||||||| |||||||||||| ||||||| |||||||||| | ||||||||| |
|
|
| T |
22955271 |
gtgacatggattaaatacacaaatgttcaataattgaccatttaacttcaccagaaaagtcattctcattacttcaccata |
22955351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 37854253 - 37854323
Alignment:
| Q |
7 |
gtgagatgaattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatga |
77 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||| ||||||| |||| ||||||| |||||||||||| |
|
|
| T |
37854253 |
gtgacatggattaaatacacaaatgctcaataattgaccatttaatttcaccagaaaagtcattctcatga |
37854323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 94
Target Start/End: Original strand, 4618719 - 4618801
Alignment:
| Q |
12 |
atgaattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaatttt |
94 |
Q |
| |
|
|||||||||||||||||||| ||||| ||| ||||||||||| | || |||||||||| |||||| || ||| || |||||| |
|
|
| T |
4618719 |
atgaattaaatacacaaatgttcaatgattagtcatttaactttaccaaaaaaatcattttcatgactttaccgtagaatttt |
4618801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 5781607 - 5781537
Alignment:
| Q |
7 |
gtgagatgaattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatga |
77 |
Q |
| |
|
|||| ||| ||||||||||||||| | ||| |||||||||||||||| | ||||||||||||| |||||| |
|
|
| T |
5781607 |
gtgacatggattaaatacacaaatatttaatgattgatcatttaactttaccagaaaaatcattttcatga |
5781537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 7742999 - 7742945
Alignment:
| Q |
16 |
attaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcatt |
70 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||| ||||||||| |||| ||||| |
|
|
| T |
7742999 |
attaaatacacaaatactcaatgattgatcattttacttcatcaaaaaagtcatt |
7742945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 98
Target Start/End: Complemental strand, 37347045 - 37346995
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttccaa |
98 |
Q |
| |
|
||||||||| || |||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
37347045 |
ttaacttcaccaaaaaaatcattttcatgacttcaccataaaattttccaa |
37346995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 40382016 - 40381940
Alignment:
| Q |
20 |
aatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
|||||| |||| || ||| ||| |||||||||||||| ||||||| |||||||||| | |||||| || |||||||| |
|
|
| T |
40382016 |
aatacataaatacttaatgattaatcatttaacttcaccagaaaagtcattctcataacttcaccgtagaattttcc |
40381940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 48928704 - 48928748
Alignment:
| Q |
51 |
acttcatcagaaaaatcattctcatgatttcaccataaaattttc |
95 |
Q |
| |
|
|||||| ||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
48928704 |
acttcaccagaaaagtcattctcatgacttcaccataaaattttc |
48928748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 8133524 - 8133610
Alignment:
| Q |
13 |
tgaattaaatacacaaatgctcaataattgatca--tttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcca |
97 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||| |||||||||| || |||| | ||||| |||| ||||| || ||||||||| |
|
|
| T |
8133524 |
tgaattaaatacacaaatgcttaatgattgatcatttttaacttcaccaaaaaagttattcttatgacttcacagtagaattttcca |
8133610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 98
Target Start/End: Complemental strand, 6546542 - 6546492
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttccaa |
98 |
Q |
| |
|
||||||||| |||||||||||||| |||| ||||||||| |||||||||| |
|
|
| T |
6546542 |
ttaacttcactagaaaaatcattcttatgacttcaccatagaattttccaa |
6546492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 94
Target Start/End: Original strand, 25691683 - 25691729
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaatttt |
94 |
Q |
| |
|
||||||||| |||||| |||||||||||| |||||||||||||||| |
|
|
| T |
25691683 |
ttaacttcacgagaaaagtcattctcatgacttcaccataaaatttt |
25691729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 49002306 - 49002241
Alignment:
| Q |
16 |
attaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttca |
82 |
Q |
| |
|
||||||||||||||| |||||| |||| |||||| ||||||| | |||||||||| |||||| |||| |
|
|
| T |
49002306 |
attaaatacacaaatactcaatgattgttcatttcacttcat-aaaaaaatcattatcatgacttca |
49002241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 5657619 - 5657668
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcca |
97 |
Q |
| |
|
||||||||| |||||| |||||||||||| ||||||||| ||||||||| |
|
|
| T |
5657619 |
ttaacttcactagaaaagtcattctcatgacttcaccatagaattttcca |
5657668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 18797352 - 18797304
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
||||||||| || |||| |||||||||||| ||||||||| |||||||| |
|
|
| T |
18797352 |
ttaacttcaccaaaaaagtcattctcatgacttcaccatagaattttcc |
18797304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 21991659 - 21991611
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
||||||||| || ||||||||||||||||| |||||| || |||||||| |
|
|
| T |
21991659 |
ttaacttcaccataaaaatcattctcatgacttcaccctagaattttcc |
21991611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 26524465 - 26524513
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
||||| ||| ||||||| |||||||||||| ||||||||| |||||||| |
|
|
| T |
26524465 |
ttaacatcaccagaaaagtcattctcatgacttcaccatagaattttcc |
26524513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 32432480 - 32432432
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
||||||||| ||||||||||||| || ||| ||||||||| |||||||| |
|
|
| T |
32432480 |
ttaacttcaccagaaaaatcattttcgtgacttcaccatagaattttcc |
32432432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 22)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 7 - 96
Target Start/End: Complemental strand, 6177864 - 6177775
Alignment:
| Q |
7 |
gtgagatgaattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||| |||||||||||| ||||||| |||||||||||| ||| || || |||||||| |
|
|
| T |
6177864 |
gtgacatgaattaaatacacaaatgctcaatgattgaccatttaacttcaccagaaaagtcattctcatgacttcgccgtagaattttcc |
6177775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 7 - 94
Target Start/End: Complemental strand, 41643961 - 41643874
Alignment:
| Q |
7 |
gtgagatgaattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaatttt |
94 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||| |||||||||||| || |||| ||||| |||||| ||||||||| |||||| |
|
|
| T |
41643961 |
gtgacatgaattaaatacacaaatgctcaatgattgaccatttaacttcaccaaaaaagtcattatcatgacttcaccatagaatttt |
41643874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 7 - 96
Target Start/End: Original strand, 34441880 - 34441969
Alignment:
| Q |
7 |
gtgagatgaattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||| ||||||||||| | || |||| ||||| |||||| ||||||||| |||||||| |
|
|
| T |
34441880 |
gtgacatgaattaaatacacaaatattcaataattggtcatttaactttaccaaaaaagtcattttcatgacttcaccatagaattttcc |
34441969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 7 - 96
Target Start/End: Complemental strand, 41713253 - 41713164
Alignment:
| Q |
7 |
gtgagatgaattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
|||| |||||||||||||| |||| ||||| |||| |||||||| |||| ||||||||||||| |||||||||||| ||| |||||||| |
|
|
| T |
41713253 |
gtgacatgaattaaatacataaatattcaatgattggtcatttaatttcaccagaaaaatcattttcatgatttcactatagaattttcc |
41713164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 39788545 - 39788625
Alignment:
| Q |
16 |
attaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||| |||||| |||||| ||||||| |||| |||||||||||||||||| |
|
|
| T |
39788545 |
attaaatacacaaatgctcaatgattgactatttgacttcactagaaaagtcattcttatgacttcaccataaaattttcc |
39788625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 96
Target Start/End: Complemental strand, 19073447 - 19073357
Alignment:
| Q |
7 |
gtgagatgaattaaatacacaaatgctcaataattgatcatttaacttcatc-agaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
|||| ||| ||||||||||||||| |||||| ||||| |||||||||||| | | ||||||||||||||| | ||||||||| |||||||| |
|
|
| T |
19073447 |
gtgacatggattaaatacacaaattctcaatgattgaccatttaacttcaccaaaaaaaatcattctcataacttcaccatagaattttcc |
19073357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 7 - 92
Target Start/End: Original strand, 18947557 - 18947642
Alignment:
| Q |
7 |
gtgagatgaattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaatt |
92 |
Q |
| |
|
|||| ||| |||||||||||||||| ||||| ||||| |||||||||||| ||||||| | ||| |||||| ||||||||| |||| |
|
|
| T |
18947557 |
gtgacatggattaaatacacaaatgttcaatgattgaccatttaacttcaccagaaaagttattttcatgacttcaccatagaatt |
18947642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 19093462 - 19093413
Alignment:
| Q |
47 |
tttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
19093462 |
tttaacttcaccagaaaaatcattctcatgacttcaccataaaattttcc |
19093413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 18779360 - 18779412
Alignment:
| Q |
7 |
gtgagatgaattaaatacacaaatgctcaataattgatcatttaacttcatca |
59 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
18779360 |
gtgacatgaattaaatacacaaatgctcaatgattgaccatttaacttcatca |
18779412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 26357625 - 26357573
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttccaaga |
100 |
Q |
| |
|
||||||||||||||||| ||||| |||||| |||||||||||||||||||||| |
|
|
| T |
26357625 |
ttaacttcatcagaaaagtcattttcatgacttcaccataaaattttccaaga |
26357573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 42005478 - 42005390
Alignment:
| Q |
7 |
gtgagatgaattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaattttc |
95 |
Q |
| |
|
|||| ||| |||||||| |||||| ||||| ||||||||||||||||| || |||||||||| |||||| ||||||||| ||||||| |
|
|
| T |
42005478 |
gtgacatggattaaataaacaaatattcaatggttgatcatttaacttcaccaaaaaaatcattttcatgacttcaccatagaattttc |
42005390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 39167518 - 39167566
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
|||||||||||| ||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
39167518 |
ttaacttcatcaaaaaaatcattctcgtgacttcaccataaaattttcc |
39167566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 97
Target Start/End: Original strand, 18514769 - 18514820
Alignment:
| Q |
46 |
atttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcca |
97 |
Q |
| |
|
|||||||||||||| |||| |||||||||||| ||||| ||||||||||||| |
|
|
| T |
18514769 |
atttaacttcatcaaaaaagtcattctcatgacttcactataaaattttcca |
18514820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 98
Target Start/End: Complemental strand, 41465557 - 41465507
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttccaa |
98 |
Q |
| |
|
||||||||| ||||||| |||||||||||| ||||||||| |||||||||| |
|
|
| T |
41465557 |
ttaacttcaccagaaaagtcattctcatgacttcaccatagaattttccaa |
41465507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 19424783 - 19424831
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
||||||||| ||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
19424783 |
ttaacttcaccagaaaagccattctcatgacttcaccataaaattttcc |
19424831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 22963484 - 22963399
Alignment:
| Q |
16 |
attaaatacacaaatgctcaataattgatcat----ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcca |
97 |
Q |
| |
|
|||||||||||||| ||| ||| |||| |||| ||||||| | ||||||| ||||||| |||| ||||||||||||||||||| |
|
|
| T |
22963484 |
attaaatacacaaaagctaaatgattggtcataggattaactttaccagaaaagtcattcttatgacttcaccataaaattttcca |
22963399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 22997993 - 22998078
Alignment:
| Q |
16 |
attaaatacacaaatgctcaataattgatcat----ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcca |
97 |
Q |
| |
|
|||||||||||||| ||| ||| |||| |||| ||||||| | ||||||| ||||||| |||| ||||||||||||||||||| |
|
|
| T |
22997993 |
attaaatacacaaaagctaaatgattggtcataggattaactttaccagaaaagtcattcttatgacttcaccataaaattttcca |
22998078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 27138992 - 27139056
Alignment:
| Q |
20 |
aatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcacc |
84 |
Q |
| |
|
|||||||||||| ||||| |||| ||||||||||||||| |||| ||||| |||||| |||||| |
|
|
| T |
27138992 |
aatacacaaatgatcaatgattggccatttaacttcatcaaaaaagtcattttcatgacttcacc |
27139056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 98
Target Start/End: Complemental strand, 4763676 - 4763626
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttccaa |
98 |
Q |
| |
|
||||||||||||||||| ||||| |||||| |||| |||| |||||||||| |
|
|
| T |
4763676 |
ttaacttcatcagaaaagtcattttcatgacttcatcatagaattttccaa |
4763626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 94
Target Start/End: Original strand, 8429699 - 8429749
Alignment:
| Q |
44 |
tcatttaacttcatcagaaaaatcattctcatgatttcaccataaaatttt |
94 |
Q |
| |
|
||||||||||| ||||||||||||||||| | | |||||||||||||||| |
|
|
| T |
8429699 |
tcatttaactttatcagaaaaatcattcttacaacttcaccataaaatttt |
8429749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 44285997 - 44285951
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaatttt |
94 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||| || |||||| |
|
|
| T |
44285997 |
ttaacttcatcagaaaaatcattcgcatgacttcaccgtataatttt |
44285951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 65
Target Start/End: Original strand, 18059326 - 18059379
Alignment:
| Q |
12 |
atgaattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaa |
65 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||| ||| || ||||| |
|
|
| T |
18059326 |
atgaattaaatacacaaatattcaataattgaccatttaacatcaccaaaaaaa |
18059379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 22)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 36055838 - 36055922
Alignment:
| Q |
12 |
atgaattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
||||||||||| |||||||||||||| ||||| |||||||||||| |||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
36055838 |
atgaattaaattcacaaatgctcaatgattgaccatttaacttcacaagaaaagtcattctcatgacatcaccataaaattttcc |
36055922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 10237503 - 10237415
Alignment:
| Q |
7 |
gtgagatgaattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaattttc |
95 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||| |||||||||||| |||||| ||||| |||||| ||||| ||| ||||||| |
|
|
| T |
10237503 |
gtgaaatgaattaaatacacaaatgctcaatgattgaccatttaacttcactagaaaagtcattttcatgacttcacaatagaattttc |
10237415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 41417546 - 41417625
Alignment:
| Q |
15 |
aattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaatttt |
94 |
Q |
| |
|
||||||||||||||||| ||||| ||| | |||||||||||| |||||||||||||| | |||||||||||| |||||| |
|
|
| T |
41417546 |
aattaaatacacaaatgttcaatgattaaccatttaacttcactagaaaaatcattcttacgatttcaccatataatttt |
41417625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 21320830 - 21320752
Alignment:
| Q |
17 |
ttaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaattttc |
95 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||||||||| |||| ||||| | || | ||||||||| ||||||| |
|
|
| T |
21320830 |
ttaaatacacgaatgctcaatgattgatcatttaacttcatcaaaaaagtcatttttattacttcaccatagaattttc |
21320752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 96
Target Start/End: Complemental strand, 22616582 - 22616494
Alignment:
| Q |
7 |
gtgagatgaattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
|||| ||| |||||||||| || |||||||| |||| |||||||||||| ||||||| ||||| |||||| ||||||||| |||||||| |
|
|
| T |
22616582 |
gtgacatggattaaatacataa-tgctcaatgattggccatttaacttcaccagaaaagtcattttcatgacttcaccatagaattttcc |
22616494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 13380579 - 13380498
Alignment:
| Q |
16 |
attaaatacacaaatgctcaataattgatcat----ttaacttcatcagaaaaatcattctcatgatttcaccataaaattt |
93 |
Q |
| |
|
||||||||||||||| |||| ||| ||||||| ||||||||| |||||| |||||||||||| ||||||||||||||| |
|
|
| T |
13380579 |
attaaatacacaaatactcattaagtgatcatagggttaacttcactagaaaagtcattctcatgacttcaccataaaattt |
13380498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 35933950 - 35933902
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
35933950 |
ttaacttcatcaaaaaaatcattctcatgacttcaccatacaattttcc |
35933902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 699198 - 699152
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaatttt |
94 |
Q |
| |
|
||||||||||||||||| |||||||||| | |||||||||||||||| |
|
|
| T |
699198 |
ttaacttcatcagaaaagtcattctcataacttcaccataaaatttt |
699152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 97
Target Start/End: Original strand, 14409456 - 14409502
Alignment:
| Q |
51 |
acttcatcagaaaaatcattctcatgatttcaccataaaattttcca |
97 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
14409456 |
acttcaccagaaaaatcattctcatgacttcaccatagaattttcca |
14409502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 8742014 - 8742062
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
||||||||| ||||||| |||||||||||| ||||||||| |||||||| |
|
|
| T |
8742014 |
ttaacttcaccagaaaagtcattctcatgacttcaccatagaattttcc |
8742062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 97
Target Start/End: Original strand, 33753050 - 33753094
Alignment:
| Q |
53 |
ttcatcagaaaaatcattctcatgatttcaccataaaattttcca |
97 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
33753050 |
ttcaccagaaaaatcattctcatgatttcactatagaattttcca |
33753094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 38528363 - 38528411
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
|||||||||||||||||| |||| |||||| ||||||||| |||||||| |
|
|
| T |
38528363 |
ttaacttcatcagaaaaaccattttcatgacttcaccatagaattttcc |
38528411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 61 - 96
Target Start/End: Complemental strand, 24886137 - 24886102
Alignment:
| Q |
61 |
aaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| |
|
|
| T |
24886137 |
aaaagtcattctcatgatttcaccataaaattttcc |
24886102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 48 - 95
Target Start/End: Complemental strand, 32563197 - 32563150
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttc |
95 |
Q |
| |
|
||||||||||||||||||||||| | |||| ||||||||| ||||||| |
|
|
| T |
32563197 |
ttaacttcatcagaaaaatcattttaatgacttcaccatagaattttc |
32563150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 98
Target Start/End: Complemental strand, 36866810 - 36866760
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttccaa |
98 |
Q |
| |
|
||||||||| ||||||||||||| || ||| ||||||||| |||||||||| |
|
|
| T |
36866810 |
ttaacttcaccagaaaaatcattttcgtgacttcaccatagaattttccaa |
36866760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 31878472 - 31878423
Alignment:
| Q |
7 |
gtgagatgaattaaatacacaaatgctcaataattgatcatttaacttca |
56 |
Q |
| |
|
|||| |||||||||||||||||||||| ||| ||||| ||||||||||| |
|
|
| T |
31878472 |
gtgacatgaattaaatacacaaatgcttaatgattgacaatttaacttca |
31878423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 5112440 - 5112488
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
||||||||| || |||| ||||| |||||| |||||||||||||||||| |
|
|
| T |
5112440 |
ttaacttcaccaaaaaagtcattttcatgacttcaccataaaattttcc |
5112488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 19119907 - 19119859
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
||||||||| || |||| |||||||||||| ||||||||| |||||||| |
|
|
| T |
19119907 |
ttaacttcaccacaaaagtcattctcatgacttcaccatagaattttcc |
19119859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 22974209 - 22974257
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
||||||||| || ||||||||||||||| | ||||||||| |||||||| |
|
|
| T |
22974209 |
ttaacttcaccaaaaaaatcattctcataacttcaccatagaattttcc |
22974257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 25653673 - 25653633
Alignment:
| Q |
7 |
gtgagatgaattaaatacacaaatgctcaataattgatcat |
47 |
Q |
| |
|
|||| ||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
25653673 |
gtgatatgaattaaatacacaaatactcaatgattgatcat |
25653633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 84
Target Start/End: Original strand, 27318614 - 27318650
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcacc |
84 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
27318614 |
ttaacttcaccagaaaaatcattctcatgacttcacc |
27318650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 36860471 - 36860423
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
||||||||| ||||||||||||| || ||| ||||||||| |||||||| |
|
|
| T |
36860471 |
ttaacttcaccagaaaaatcattttcgtgacttcaccatagaattttcc |
36860423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0200 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0200
Description:
Target: scaffold0200; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 7 - 96
Target Start/End: Original strand, 24776 - 24865
Alignment:
| Q |
7 |
gtgagatgaattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||| ||||||| |||| |||||||||||||||||| | || ||||| |||||||| |
|
|
| T |
24776 |
gtgacatgaattaaatacacaaatgctcaatgattgaccatttaatttcaccagaaaaatcattctcataactttgccatagaattttcc |
24865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 7 - 96
Target Start/End: Complemental strand, 19631838 - 19631749
Alignment:
| Q |
7 |
gtgagatgaattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
|||| ||| |||||||||||||||| ||||| |||| ||||||||||||| ||||||| ||||||| |||| ||||||||| |||||||| |
|
|
| T |
19631838 |
gtgacatggattaaatacacaaatgttcaatgattggtcatttaacttcaccagaaaagtcattcttatgacttcaccatagaattttcc |
19631749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 96
Target Start/End: Original strand, 26301882 - 26301971
Alignment:
| Q |
7 |
gtgagatgaattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
|||| |||||||||||||| |||| ||||| |||| ||||||||||||| | |||||||||| | |||| ||||||||| |||||||| |
|
|
| T |
26301882 |
gtgacatgaattaaatacataaatattcaatgattggtcatttaacttcacgaaaaaaatcatttttatgacttcaccatataattttcc |
26301971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 6088956 - 6088910
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaatttt |
94 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
6088956 |
ttaacttcaccagaaaaatcattctcatgacttcaccatagaatttt |
6088910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 29182211 - 29182165
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaatttt |
94 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
29182211 |
ttaacttcatcaataaaatcattctcatgacttcaccataaaatttt |
29182165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 96
Target Start/End: Original strand, 11084111 - 11084200
Alignment:
| Q |
7 |
gtgagatgaattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
|||| ||| |||||||||| |||| ||||| |||| ||||||||||| | ||||||| | ||| |||||| ||||||||| |||||||| |
|
|
| T |
11084111 |
gtgacatggattaaatacataaatattcaatgattggtcatttaactttaccagaaaagttattttcatgacttcaccatagaattttcc |
11084200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 94
Target Start/End: Original strand, 6614034 - 6614082
Alignment:
| Q |
46 |
atttaacttcatcagaaaaatcattctcatgatttcaccataaaatttt |
94 |
Q |
| |
|
||||||||||| ||||||| ||||||| |||||||||||||| |||||| |
|
|
| T |
6614034 |
atttaacttcaccagaaaagtcattcttatgatttcaccatataatttt |
6614082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 7055351 - 7055399
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
||||||||| || |||||||||||| |||| |||||||||||||||||| |
|
|
| T |
7055351 |
ttaacttcaccaaaaaaatcattcttatgacttcaccataaaattttcc |
7055399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 8513281 - 8513233
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
||||||||| ||||||| |||||||||||| ||||||||| |||||||| |
|
|
| T |
8513281 |
ttaacttcaccagaaaagtcattctcatgacttcaccatagaattttcc |
8513233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 94
Target Start/End: Original strand, 30353494 - 30353540
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaatttt |
94 |
Q |
| |
|
||||||||| ||||||| |||||||||||| ||||||||| |||||| |
|
|
| T |
30353494 |
ttaacttcaccagaaaagtcattctcatgacttcaccatagaatttt |
30353540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 4318959 - 4319007
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
||||||||| || |||| |||||||||||| ||||||||| |||||||| |
|
|
| T |
4318959 |
ttaacttcaccaaaaaagtcattctcatgacttcaccatagaattttcc |
4319007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 95
Target Start/End: Complemental strand, 20768131 - 20768087
Alignment:
| Q |
51 |
acttcatcagaaaaatcattctcatgatttcaccataaaattttc |
95 |
Q |
| |
|
|||||| ||||||| |||||||||||| ||||||||| ||||||| |
|
|
| T |
20768131 |
acttcaccagaaaagtcattctcatgacttcaccatagaattttc |
20768087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 15)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 4108879 - 4108960
Alignment:
| Q |
15 |
aattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
|||||||||||||||| ||||| |||| ||||||||||| | || |||| ||||| |||||| |||||||||||||||||| |
|
|
| T |
4108879 |
aattaaatacacaaatattcaatgattggtcatttaactttaccaaaaaagtcattttcatgacttcaccataaaattttcc |
4108960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 38110401 - 38110353
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
38110401 |
ttaacttcatcagaaaaatcattttcatgacttcaccataaaattttcc |
38110353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 48 - 98
Target Start/End: Complemental strand, 13307670 - 13307620
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttccaa |
98 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
13307670 |
ttaacttcaccagaaaaatcattctcatgacttcaccatagaattttccaa |
13307620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 98
Target Start/End: Complemental strand, 33197939 - 33197889
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttccaa |
98 |
Q |
| |
|
||||||| ||||||||||| |||||||||| ||||||||| |||||||||| |
|
|
| T |
33197939 |
ttaacttaatcagaaaaattattctcatgacttcaccatagaattttccaa |
33197889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 23176722 - 23176811
Alignment:
| Q |
7 |
gtgagatgaattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccata-aaattttc |
95 |
Q |
| |
|
|||| ||| ||||| ||||||||| ||||| |||| ||||||||||||| || |||| ||||| |||||| ||||||||| |||||||| |
|
|
| T |
23176722 |
gtgacatgcattaagtacacaaatattcaatgattggtcatttaacttcaccaaaaaagtcattttcatgacttcaccatagaaattttc |
23176811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 1204974 - 1204926
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
||||||||| ||||||| |||||||||||| |||||| ||||||||||| |
|
|
| T |
1204974 |
ttaacttcaccagaaaagtcattctcatgacttcaccgtaaaattttcc |
1204926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 34895014 - 34894966
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
||||||||||||||||| ||||| |||||| ||||||||| |||||||| |
|
|
| T |
34895014 |
ttaacttcatcagaaaagtcattttcatgacttcaccatagaattttcc |
34894966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 5300089 - 5300139
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttccaa |
98 |
Q |
| |
|
|||||||||| | |||| |||||||||||| ||||||||| |||||||||| |
|
|
| T |
5300089 |
ttaacttcattaaaaaagtcattctcatgacttcaccatagaattttccaa |
5300139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 97
Target Start/End: Complemental strand, 33906268 - 33906222
Alignment:
| Q |
51 |
acttcatcagaaaaatcattctcatgatttcaccataaaattttcca |
97 |
Q |
| |
|
|||||| ||||||| |||||||||| ||||||||||| ||||||||| |
|
|
| T |
33906268 |
acttcaccagaaaagtcattctcataatttcaccatagaattttcca |
33906222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 39099258 - 39099300
Alignment:
| Q |
54 |
tcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||| |||||||| |
|
|
| T |
39099258 |
tcatcagaaaagtcattctcatgacttcaccatagaattttcc |
39099300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 8151371 - 8151451
Alignment:
| Q |
7 |
gtgagatgaattaaatacacaaatgctcaataattgatcatttaacttcatcagaaaaatcattctcatgatttcaccata |
87 |
Q |
| |
|
|||| ||| ||||||| ||||||| ||||| |||| ||||||||||||| || |||| ||||| |||||| | ||||||| |
|
|
| T |
8151371 |
gtgacatggattaaatgcacaaatattcaatgattggtcatttaacttcaccaaaaaagtcattttcatgactgcaccata |
8151451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 16222910 - 16222862
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
|||| |||| ||||||| ||||||||||||||||||| || |||||||| |
|
|
| T |
16222910 |
ttaaattcaccagaaaagtcattctcatgatttcaccgtagaattttcc |
16222862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 30654726 - 30654774
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
||||||||| || |||||||| ||| |||| |||||||||||||||||| |
|
|
| T |
30654726 |
ttaacttcaccaaaaaaatcactcttatgacttcaccataaaattttcc |
30654774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 36695109 - 36695157
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
||||||||||||||||| ||||| || ||| ||||||||| |||||||| |
|
|
| T |
36695109 |
ttaacttcatcagaaaagtcattttcctgacttcaccatagaattttcc |
36695157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 38644025 - 38643977
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
||||||| | || |||| |||||||||||||||||||||| |||||||| |
|
|
| T |
38644025 |
ttaacttgaccaaaaaagtcattctcatgatttcaccatagaattttcc |
38643977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 42396 - 42348
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
||||||||| ||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
42396 |
ttaacttcaccagaaaaattattctcatgacttcaccataaaattttcc |
42348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 100869 - 100821
Alignment:
| Q |
48 |
ttaacttcatcagaaaaatcattctcatgatttcaccataaaattttcc |
96 |
Q |
| |
|
||||||||| || ||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
100869 |
ttaacttcaccaaaaaaatcattctcatgacttcaccatagaattttcc |
100821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University