View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17661_low_22 (Length: 369)
Name: NF17661_low_22
Description: NF17661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17661_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 12 - 354
Target Start/End: Complemental strand, 38847628 - 38847283
Alignment:
| Q |
12 |
aaaggataaaagaatttaataatttgtattttgaaacaattaaacaatatgtgtattattatgtgtctaaatgactttttatttagggttgtttgtgaca |
111 |
Q |
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| T |
38847628 |
aaaggataaaagaatttaataatttgtattttgaaacaattaaacaat--gtgtattattatgtgtctaaatgactttttatttagggttgtttgtgaca |
38847531 |
T |
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| Q |
112 |
tagtaaaatggaccctatttttcacttgtcacccaccacact---------gctcggcataaagtggaattaaaatggaccctacttgattataaaggca |
202 |
Q |
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| T |
38847530 |
aagtaaaatgaaccctacttttcacttgtcacccaccacactacactgctcgatcggcataaagtggaattaaaatggaccctacttgattataaagcca |
38847431 |
T |
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| Q |
203 |
gattacatcaaaattaaataatgtacaaaaaggcatagtgatcagtggagcaaaaagatatacnnnnnnnntaaaacagctacgtacaatcccaaagaat |
302 |
Q |
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| T |
38847430 |
gattacataaaaattaaataatgtacaaaaaggcatagtgatcagtggagcaaaaagatatacaaaaaaattaaaacagc----tacaatcctaaagaat |
38847335 |
T |
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| Q |
303 |
attataactaaccagcaagaaggcaccaaatgctaatacagtagtatatatt |
354 |
Q |
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| T |
38847334 |
attataactaaccagcaagaaggcaccaaatgctaatacagtagtatatatt |
38847283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 152 - 245
Target Start/End: Complemental strand, 38827882 - 38827790
Alignment:
| Q |
152 |
ctgctcggcataaagtggaattaaaatggaccctacttgattataaaggcagattacatcaaaattaaataatgtacaaaaaggcatagtgatc |
245 |
Q |
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| T |
38827882 |
ctgcttggcataaagtggaattaaaatggatcctacttcattataaagccagattaaat-taaattaaataatatacaaaaagacatagtgatc |
38827790 |
T |
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