View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17661_low_23 (Length: 363)
Name: NF17661_low_23
Description: NF17661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17661_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 16 - 345
Target Start/End: Original strand, 36885715 - 36886044
Alignment:
| Q |
16 |
atacaatctcatcctataaaaatgaataagagccagttttgataaacttttgaacatttacaaaaaattaattatcaaaagaatcttgcaataacaatga |
115 |
Q |
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| T |
36885715 |
atacaatctcatcctataaaaatgaataagagccagtttggataaacttttgaacatttacaaaaaattaattatcaaaagaatcttgcaataacaatga |
36885814 |
T |
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| Q |
116 |
tgtatctttttcataaaaacaaactgtgatgtttttaaatattaatatcttacataagttaaaatttacttcaacatctcaattattttaaaataaattc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36885815 |
tgtatctttttcataaaaacaaactgtgatgtttttaaatattaatatcttacataagttaaaatttacttcaacatctcaattattttaaaataaattc |
36885914 |
T |
|
| Q |
216 |
accttcaatttacccattagtgaagatttttattttataagtgcagaaccattaacataaaataggaattcaatttatatacatcatcagtgtaaagata |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36885915 |
accttcaatttacccattagtgaagatttttattttataagtgcagaaccattaacataaaataggaattcaatttatatacatcatcagtgtaaagata |
36886014 |
T |
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| Q |
316 |
ttttacactatcaatcaatcataatcgtca |
345 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
36886015 |
ttttacactatcaatcaatcataatcgtca |
36886044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 345
Target Start/End: Complemental strand, 17213847 - 17213789
Alignment:
| Q |
287 |
aatttatatacatcatcagtgtaaagatattttacactatcaatcaatcataatcgtca |
345 |
Q |
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| T |
17213847 |
aattcatatacattgtcagtgtaaagatagtttatactgtcaatcaatcataattgtca |
17213789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 336
Target Start/End: Original strand, 36225593 - 36225642
Alignment:
| Q |
287 |
aatttatatacatcatcagtgtaaagatattttacactatcaatcaatca |
336 |
Q |
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| T |
36225593 |
aattcatatacattgtcagtgtaaagatattttacactgccaatcaatca |
36225642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 35 - 187
Target Start/End: Complemental strand, 20088524 - 20088384
Alignment:
| Q |
35 |
aaatgaataagagccagttttgataaacttttgaacatttacaaaaaattaattatcaaaagaatcttgcaataacaatgatgtatctttttcataaaaa |
134 |
Q |
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|||| |||||||| |||||| ||||||||||| ||||||| || ||||| ||||||||||||||||| ||||| ||| |||||||||| |
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| T |
20088524 |
aaattaataagaggcagtttggataaactttttaacatttgcagaaaataaattatcaaaagaatct------------gatgt--cttcttcataaaaa |
20088439 |
T |
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| Q |
135 |
caaactgtgatgt-ttttaaatattaatatctt-acataagttaaaatttacttc |
187 |
Q |
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| T |
20088438 |
caaactgtgatgttttttaaatattaatatcttaacataagtgaaaatttgcttc |
20088384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 292 - 343
Target Start/End: Complemental strand, 7601491 - 7601440
Alignment:
| Q |
292 |
atatacatcatcagtgtaaagatattttacactatcaatcaatcataatcgt |
343 |
Q |
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|||||||| |||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
7601491 |
atatacattatcagtgtaaagattttttacactgtcaatcaatcataatcgt |
7601440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 342
Target Start/End: Original strand, 51125814 - 51125874
Alignment:
| Q |
282 |
aattcaatttatatacatcatcagtgtaaagatattttacactatcaatcaatcataatcg |
342 |
Q |
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|||| |||| |||| |||| |||||| ||||| |||||||||| |||||||||||||||| |
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| T |
51125814 |
aatttaattgatatgcatcggcagtgtgaagattttttacactaccaatcaatcataatcg |
51125874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 292 - 343
Target Start/End: Original strand, 8960961 - 8961012
Alignment:
| Q |
292 |
atatacatcatcagtgtaaagatattttacactatcaatcaatcataatcgt |
343 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||| |||||||||||| ||||| |
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| T |
8960961 |
atatatatcatcagtgtaaagattttttacactgtcaatcaatcatgatcgt |
8961012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 340
Target Start/End: Complemental strand, 5661942 - 5661889
Alignment:
| Q |
287 |
aatttatatacatcatcagtgtaaagatattttacactatcaatcaatcataat |
340 |
Q |
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|||| ||||||| ||||||| |||||| ||||||||| ||||||||||||||| |
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| T |
5661942 |
aattcatatacactatcagtggaaagattttttacactgtcaatcaatcataat |
5661889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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