View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17661_low_24 (Length: 362)
Name: NF17661_low_24
Description: NF17661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17661_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 6 - 234
Target Start/End: Complemental strand, 2176682 - 2176453
Alignment:
| Q |
6 |
gtcaaatgtatttggttcgagacaccgtagaacacggtatgcagtgttagtgtgtttctgtgtgagtctt-gggagttccaaaagtacttggactacact |
104 |
Q |
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| T |
2176682 |
gtcaaatgtatttggttcgagacaccgtagaacacggtatccagtgttagtgtgtttccttgtgagtctttgggagtcccaaaagtacttggactacact |
2176583 |
T |
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| Q |
105 |
attgtatatattgtctacacattttgcaagaacagagaaatgctaatttgatatcttatcaatttcaatatgaaagtagttttagcaacatnnnnnnntg |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2176582 |
attgtatatattgtctacacattttgcaagaacagagaaatgctaatttgatatcttatcaatttcaatatgaaagtagttttagcaacataaaaaaatg |
2176483 |
T |
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| Q |
205 |
actgataatttgtattttcaacatctaact |
234 |
Q |
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||||||||||||| |||||||||||||||| |
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| T |
2176482 |
actgataatttgtcttttcaacatctaact |
2176453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 299 - 353
Target Start/End: Complemental strand, 2176388 - 2176334
Alignment:
| Q |
299 |
gttttacttctaagaacaatttattcgagtcaatcagttaattattgattttctt |
353 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2176388 |
gttttacttctaagaacaatttattcgagtcaatcagttaattattgattttctt |
2176334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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