View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17661_low_25 (Length: 344)
Name: NF17661_low_25
Description: NF17661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17661_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 18 - 330
Target Start/End: Original strand, 34585762 - 34586078
Alignment:
| Q |
18 |
caggagcaactcaatttaagcaagtcctatcttttatgtggaaccagtcgttagaactatgcttgaagcgaactgtttgagcgtgcatagaaggaaggtt |
117 |
Q |
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| T |
34585762 |
caggagcaactcaatttaagcaagtcctatcttttatgtggaaccagtcgttagaactatgcttgaagcgaactgtttgagcatgcatagaaggaaggtt |
34585861 |
T |
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| Q |
118 |
gttagtctcattgagacaacaaaatgcatcctacaacgagttgtcttcagaagtttctctccctctcaactgtttaattaccttaagttcatttcgaatg |
217 |
Q |
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| T |
34585862 |
gttagtctcattgagacaacaaaatgcatcctacaacgagttgtcttcagaagtttctctccctctcaactgtttaattaccttaagttcatttcgaatg |
34585961 |
T |
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| Q |
218 |
tttggtactctcatcagataagtggattgttcaagaaaac----atgtcttagaaaaagagggattcaaagtctgttatattttagttatataattttta |
313 |
Q |
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| T |
34585962 |
tttggtactctcatcagataagtggattgttcaagaaaacatgtatgtcttagaaaaagagggattcaaagtctgttatattttagttatataattttta |
34586061 |
T |
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| Q |
314 |
ctcttgcttttgtatat |
330 |
Q |
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| T |
34586062 |
ctcttgcttttgtatat |
34586078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 88 - 258
Target Start/End: Original strand, 34584402 - 34584570
Alignment:
| Q |
88 |
aactgtttgagcgtgcatagaaggaaggttgttagtctcattgagacaacaaaatgcatcctacaacgagttgtcttcagaagtttctctccctctcaac |
187 |
Q |
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| T |
34584402 |
aactgtttgagcttaaatagaaggaaggttgttagtc--attgaggcaacaaaatggatcctacaaggagttggcttcagaagtttctctccctctcaac |
34584499 |
T |
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| Q |
188 |
tgtttaattaccttaagttcatttcgaatgtttggtactctcatcagataagtggattgttcaagaaaaca |
258 |
Q |
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| T |
34584500 |
tgttcagttaccttaagtacatttcagatgtttgttactctcatcggataagtggactgttcaagaaaaca |
34584570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 170
Target Start/End: Original strand, 34582763 - 34582844
Alignment:
| Q |
87 |
gaactgtttgagcgtgcatagaaggaaggttgttagtctcattgagacaacaaaatgcatcctacaacgagttgtcttcagaag |
170 |
Q |
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| T |
34582763 |
gaactgtttgagtttgcgaagaaggaaggttgttag--tcactgaggcaacaaaatggatccttcagggagttggcttcagaag |
34582844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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