View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17661_low_27 (Length: 341)
Name: NF17661_low_27
Description: NF17661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17661_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 5 - 335
Target Start/End: Original strand, 36148264 - 36148594
Alignment:
| Q |
5 |
ggaaaaaagtgtccgttaagcactcagcgtgctgttctacccgccgttgtcattggcggcgctcgcggtgttcgaaggttgtctaatgcagtcatggttg |
104 |
Q |
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| T |
36148264 |
ggaaaaaagcttcagtcaagcactcagcgtgctgttctacccgccgttgtcattggcggcgctcgcggtgttcgaaggttgtctaatgcagtcatggttg |
36148363 |
T |
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| Q |
105 |
agatcgttcgtgctgcaactcagcataggaagaagaaaaactcggttacggaatcggttttgctgagtcaactcgcgagtaacgagtttctattgaagag |
204 |
Q |
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| T |
36148364 |
agatcgttcgtgctgcaactcagcataggaagaagaaaaactcggttacggaatcggttttgctgagtcaactcgcgagtaacgagtttctattgaagag |
36148463 |
T |
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| Q |
205 |
taagaatgttcaattaaatgttttgaacgagttgatacctgaagtgagttcactcaatgggcataatcatgcaataattcaacgtggtatgaataatcat |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36148464 |
taagaatgttcaattaaatgttttgaacgagttgatacctgaagtgagttcactcaatgggcataatcatgcaataattcaacgtggtatgaataatcat |
36148563 |
T |
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| Q |
305 |
gatttaaattctgttattatgaaacaaattt |
335 |
Q |
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||||||||||||||||||| ||||||||||| |
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| T |
36148564 |
gatttaaattctgttattaagaaacaaattt |
36148594 |
T |
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