View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17661_low_28 (Length: 331)
Name: NF17661_low_28
Description: NF17661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17661_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 180 - 320
Target Start/End: Complemental strand, 40359410 - 40359270
Alignment:
| Q |
180 |
aaacaagcaccattcttctcaaatctacgaatagatttcttattattccgaataaccctagacatcagtgccaacgtcttatgcaaaattgtaatatcaa |
279 |
Q |
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| T |
40359410 |
aaacaagcaccattcttttcaaatctacgaatagatttcttattattccgaataaccctagacatcggtgccaacgtcttatgcagaattgtaatatcaa |
40359311 |
T |
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| Q |
280 |
aaggacaaacaaactccaacaactcctaccaatgaagttct |
320 |
Q |
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| T |
40359310 |
aaggacaaacaaactccaacaactcctgccaatgaagttct |
40359270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 40359571 - 40359450
Alignment:
| Q |
19 |
acaatgcacatattatcatagcaaatattgattgatgccatacatctttaataattaattcacttactaatacaaaaacaacaacaatccaattgttaca |
118 |
Q |
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| T |
40359571 |
acaatgcacatattatcatagcaaatattgattgatgccatgcatctttaataattaattcacttactaatacaaaaacaacaacaatccaattgttaca |
40359472 |
T |
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| Q |
119 |
agtacaacaatagtcaatccaa |
140 |
Q |
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| T |
40359471 |
agtacaacaatagtcaatccaa |
40359450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 191 - 239
Target Start/End: Complemental strand, 40363569 - 40363521
Alignment:
| Q |
191 |
attcttctcaaatctacgaatagatttcttattattccgaataacccta |
239 |
Q |
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| T |
40363569 |
attcttctcaaatctacaaatagatttcttattattctgaataacccta |
40363521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 40363758 - 40363683
Alignment:
| Q |
32 |
tatcatagcaaatattgattgatgccatacatctttaataattaattcacttactaatacaaaaacaacaacaatcc |
108 |
Q |
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| T |
40363758 |
tatcatagcaaatattg-ttgatgtcatacatctttaataaccaatgctcttattaatacaaaaacaacaataatcc |
40363683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 98 - 137
Target Start/End: Complemental strand, 40363662 - 40363623
Alignment:
| Q |
98 |
aacaacaatccaattgttacaagtacaacaatagtcaatc |
137 |
Q |
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| T |
40363662 |
aacaataatcctattgttacaagtacaacaatagtcaatc |
40363623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 133
Target Start/End: Complemental strand, 11346748 - 11346656
Alignment:
| Q |
40 |
caaatattgattgatgccatacatctttaataattaattcacttactaatacaaaaacaacaacaatccaattgttacaagtacaacaatagtc |
133 |
Q |
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| T |
11346748 |
caaatattg-ttgatgttatacatctttaataatcaattcccttattaacacaaaaaagacaataatcctattgttacaagtactaaaatagtc |
11346656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 255 - 323
Target Start/End: Complemental strand, 11346536 - 11346468
Alignment:
| Q |
255 |
gtcttatgcaaaattgtaatatcaaaaggacaaacaaactccaacaactcctaccaatgaagttcttct |
323 |
Q |
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| T |
11346536 |
gtcttatgcgaaattgtaaaatccaaaggacaaacaatttccaacaactcctgccaataatgttcttct |
11346468 |
T |
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