View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17661_low_29 (Length: 325)
Name: NF17661_low_29
Description: NF17661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17661_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 7 - 294
Target Start/End: Original strand, 3656854 - 3657141
Alignment:
| Q |
7 |
ggagcagagacgctataaggcatacctttcccgcggggaaggtagacgatccatttcgtcattccctcttctaccattcaaataatggatttgtaataat |
106 |
Q |
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| T |
3656854 |
ggagcagaaacgctgaaaggcatacctttcccgcggggaaggtaggcgatccatttcgtcattccctcttctaccattcaaataatggatttgtaataat |
3656953 |
T |
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| Q |
107 |
atcttcctctacaaggatgaatctgtaataatattttcgacaatgaagatgaccctattgtcaatgcagacaggctcatgatttcttgaatacaaaatta |
206 |
Q |
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| T |
3656954 |
atcttcctctacaaggatgaatctgtaataatattttcgacaatgaagatgaccctattgtcaatgcagacaggctcgtgatttctttaatacaagatta |
3657053 |
T |
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| Q |
207 |
tcatatgtttcattaattaaatgttaccaagtgatgaagaactattactaagtttgagaatggctgataatatgaaactagtaaacaa |
294 |
Q |
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| T |
3657054 |
tcatacgttttattaattaaatgtcaccaagtgatgtacaactattactaagtttgagaatggctgataatatgaaactagtaaacaa |
3657141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 7 - 309
Target Start/End: Original strand, 3648840 - 3649157
Alignment:
| Q |
7 |
ggagcagagacgctataaggcatacctttcccgcggggaaggtagacgatccatttcgtcattccctcttctaccattcaaata--------------at |
92 |
Q |
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| T |
3648840 |
ggagcagaaacgctataaggcatacctttcccacggggaaggtagacgatccatttcgtcat-ccctcttctaccattcaaatattaaaccaaatataat |
3648938 |
T |
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| Q |
93 |
ggatttgtaataatatcttcctctacaaggatgaatctgtaataatattttcgacaatgaagatgaccctattgtcaatgcagacaggctcatgatttct |
192 |
Q |
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| T |
3648939 |
ggatttgtaacaatattttcctttgcaaccatgaatctgtaataatattttcgacaatgaagatgaccctattgtcaatgcagacacgctcatgatttct |
3649038 |
T |
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| Q |
193 |
tgaatacaaaa-tta-tcatatgtttcattaattaaatgttaccaagtgatgaagaactattactaagtttgagaatggctgataatatgaaactagtaa |
290 |
Q |
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| T |
3649039 |
ttaatacaaaaattagtcatacgtttgattaattaaatgttaccaagtgatgaagaactattactaagtttgagaatggctgataatatgaaactagtaa |
3649138 |
T |
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| Q |
291 |
acaaatgtaaacaaacaaa |
309 |
Q |
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| T |
3649139 |
acaaatgtaaacaaacaaa |
3649157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 207
Target Start/End: Original strand, 3644423 - 3644479
Alignment:
| Q |
151 |
gaagatgaccctattgtcaatgcagacaggctcatgatttcttgaatacaaaattat |
207 |
Q |
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| T |
3644423 |
gaagatgacccttttgtcagtgcagagaggctcatgctttctataatacaaaattat |
3644479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 167 - 309
Target Start/End: Original strand, 36164406 - 36164552
Alignment:
| Q |
167 |
tcaatgcagacaggctcatgatttcttgaatacaaaattatcatatgtttcatt--aattaaatgttaccaagtgatgaagaactattactaagtttgag |
264 |
Q |
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| T |
36164406 |
tcaatgcagataggctcatgctttctttaatacaaaattatcatacgttttagtgtaattaaatgtcactaagtgatgtagaactattactaagtttgag |
36164505 |
T |
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| Q |
265 |
aatggctgataatatgaaac--tagtaaacaaatgtaaacaaacaaa |
309 |
Q |
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| T |
36164506 |
aatggctgataatatgaaactatagtaaacaaatgtaaacaatcaaa |
36164552 |
T |
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