View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17661_low_30 (Length: 313)
Name: NF17661_low_30
Description: NF17661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17661_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 296
Target Start/End: Complemental strand, 2176951 - 2176670
Alignment:
| Q |
18 |
aaaggaagaagaagctgtggtagtaattatattgatgaattattaggagaaagagaaaggatgaatgttactagagtgaaggtgaagatgacaaaggaag |
117 |
Q |
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| T |
2176951 |
aaaggaagaagaagctgtggtagtaattatattgatgaattattaggagaaagagaaaggatgaatgttactagagtgaaggtaaagatgacaaaggaag |
2176852 |
T |
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| Q |
118 |
aagcagctaagttactgtcaaaatttaaatgcaaagaa---ggagttcttccattcaaggatgttgcttctgagcttatagcactcccaatggaccgagt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2176851 |
aagcagctaagttactgtcaaaatttaaatgcaaagaaggaggagttcttccattcaaggatgttgcttctgaacttatagcactcccaatggaccgagt |
2176752 |
T |
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| Q |
215 |
taccattctgtcaacttgaaccaacatatagcctctctagaatgaaatataagaaaaaatattcaaaaagtcaaatgtattt |
296 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2176751 |
taccattctgtcaacttgaaccaacatataacctctctagaatgaaatataagaaaaaatattcaaaaagtcaaatgtattt |
2176670 |
T |
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