View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17661_low_31 (Length: 311)
Name: NF17661_low_31
Description: NF17661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17661_low_31 |
 | |
|
| [»] chr5 (9 HSPs) |
| |
|
| [»] scaffold0197 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 11 - 311
Target Start/End: Original strand, 12531356 - 12531656
Alignment:
| Q |
11 |
cacagattccgtcctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttc |
110 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
12531356 |
cacagattccgtccaggaactgttgcacttcgtgagatccgcaagtaccagaagagcaccgagcttcttataaggaagcttccattccagaggcttgttc |
12531455 |
T |
|
| Q |
111 |
gtgaaatcgctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttga |
210 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12531456 |
gtgaaatcgctcaagatttcaaaacagatctccgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttga |
12531555 |
T |
|
| Q |
211 |
ggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaactcgctcgcagaatcagaggcgagagggcttagatttgg |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12531556 |
agatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaactcgctcgcagaatcagaggcgagagggcttagatttgg |
12531655 |
T |
|
| Q |
311 |
t |
311 |
Q |
| |
|
| |
|
|
| T |
12531656 |
t |
12531656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 11 - 311
Target Start/End: Complemental strand, 12547263 - 12546963
Alignment:
| Q |
11 |
cacagattccgtcctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttc |
110 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
12547263 |
cacagattccgtccaggaactgttgcacttcgtgagatccgcaagtaccagaagagcaccgagcttcttataaggaagcttccattccagaggcttgttc |
12547164 |
T |
|
| Q |
111 |
gtgaaatcgctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttga |
210 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12547163 |
gtgaaatcgctcaagatttcaaaacagatctccgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttga |
12547064 |
T |
|
| Q |
211 |
ggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaactcgctcgcagaatcagaggcgagagggcttagatttgg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
12547063 |
agatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaacttgctcgcagaattagaggcgagagagcttagatttgg |
12546964 |
T |
|
| Q |
311 |
t |
311 |
Q |
| |
|
| |
|
|
| T |
12546963 |
t |
12546963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 25 - 309
Target Start/End: Original strand, 9894527 - 9894804
Alignment:
| Q |
25 |
tggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtgaaatcgctcag |
124 |
Q |
| |
|
|||||| ||||| |||||||||||||| || || |||| ||| || |||| |||||||||||||| || ||||||||||| | ||||| |||||| |
|
|
| T |
9894527 |
tggaacggttgctcttcgtgagatccgtaattaccagaggagcac-----ttctaataaggaagcttccgtttcagagacttgtgagggaaattgctcag |
9894621 |
T |
|
| Q |
125 |
gatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctct |
224 |
Q |
| |
|
|||| ||| || | ||| | ||||| || ||||||||||||||| ||||||||| || |||||||| | ||||| |||||||||| ||||||||| | | |
|
|
| T |
9894622 |
gatt-caagactggtctgaggttccagagtagtgctgtttctgctgttcaagaagttgttgaagcttgttttgttagtttgtttgaagatactaatattt |
9894720 |
T |
|
| Q |
225 |
gtgccattcatgctaagagggttactatcatgcctaaggatattcaactcgctcgcagaatcagaggcgagagggcttagatttg |
309 |
Q |
| |
|
| || |||||||||||| | |||||||| ||| | ||||||||| |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
9894721 |
gcgctattcatgctaagtgagttactattatggc-aaggatattgaacttgctcgcagaatcagaggcgagagggcttagatttg |
9894804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 17 - 308
Target Start/End: Complemental strand, 9866916 - 9866624
Alignment:
| Q |
17 |
ttccgtcctggaactgttgcacttcgtgagatccgcaag--tatcagaagagtaccgagcttctgataaggaagcttccattccagagact--tgttcgt |
112 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| ||| || || ||||| | |||||||| ||||||||||||| || |||||||| | | | |
|
|
| T |
9866916 |
ttccgtcctggaaccgttgcgcttcgtgagatccgtaagagtaccaaaagagcattgagcttct--taaggaagcttccgtttcagagactgatctgagg |
9866819 |
T |
|
| Q |
113 |
gaaatcgctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgagg |
212 |
Q |
| |
|
|||| ||| |||||||||| || ||||| | ||| | || |||| ||||||||||||||||||||||||| ||| |||||||||||||||||||| | |
|
|
| T |
9866818 |
gaaa-cgcgaaggatttcaagactgatctgaggttctagagtagtgatgtttctgctcttcaagaagctgctaaagactatcttgttggtttgtttgaag |
9866720 |
T |
|
| Q |
213 |
atactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaactcgctcgcagaatcagaggcgagagggcttagattt |
308 |
Q |
| |
|
||||||| || ||||| |||||||||||||| |||||||| |||||| |||| || ||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
9866719 |
atactaacctttgtgctattcatgctaagagagttactattatgcctgaggacatccaactcgcttaaagaatcagaggccagagggcttagattt |
9866624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 160 - 268
Target Start/End: Original strand, 9869994 - 9870102
Alignment:
| Q |
160 |
tgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcct |
259 |
Q |
| |
|
||||| || |||||||||||||| |||||||||| |||||||||||||| | |||| |||||| || || |||||||||||||| |||||||| |||||| |
|
|
| T |
9869994 |
tgtttatggtcttcaagaagctgttgaagcttattttgttggtttgttttaagatattaatctttgcgctattcatgctaagagagttactattatgcct |
9870093 |
T |
|
| Q |
260 |
aaggatatt |
268 |
Q |
| |
|
||||||||| |
|
|
| T |
9870094 |
aaggatatt |
9870102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 222 - 309
Target Start/End: Original strand, 12538673 - 12538760
Alignment:
| Q |
222 |
tctgtgccattcatgctaagagggttactatcatgcctaaggatattcaactcgctcgcagaatcagaggcgagagggcttagatttg |
309 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||| | |||||||||| |||||| |||||||||| |||| ||||||||||| |
|
|
| T |
12538673 |
tctgtgctattcatgctaagagagttactatcatgcctaaaggtattcaactcactcgcataatcagaggcaagagtgcttagatttg |
12538760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 131 - 249
Target Start/End: Original strand, 38735501 - 38735619
Alignment:
| Q |
131 |
aaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgcca |
230 |
Q |
| |
|
||||||||||| | ||||| |||| |||||||||||||||||| ||| ||||| ||||||||||||||||||||| |||||||| || ||| | | |
|
|
| T |
38735501 |
aaaacagatctcaggttccatagcaacgctgtttctgctcttcaaaaagtcattgaagtttatcttgttggtttgtttgaagatactaacctttgtacta |
38735600 |
T |
|
| Q |
231 |
ttcatgctaagagggttac |
249 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
38735601 |
ttcatgctaagagggttac |
38735619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 25 - 108
Target Start/End: Original strand, 9869893 - 9869976
Alignment:
| Q |
25 |
tggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgt |
108 |
Q |
| |
|
|||||| ||||| |||||||||||||| ||||| |||||||| || |||||||| |||||||||||||| || |||||||||| |
|
|
| T |
9869893 |
tggaaccgttgctcttcgtgagatccgtaagtaccagaagagcactgagcttctaataaggaagcttccgttttagagacttgt |
9869976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 280 - 311
Target Start/End: Original strand, 12537076 - 12537107
Alignment:
| Q |
280 |
cagaatcagaggcgagagggcttagatttggt |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
12537076 |
cagaatcagaggcgagagggcttagatttggt |
12537107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 17 - 308
Target Start/End: Original strand, 13576218 - 13576509
Alignment:
| Q |
17 |
ttccgtcctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtgaaa |
116 |
Q |
| |
|
|||||||||||||| || || |||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||| | ||||| |||| |
|
|
| T |
13576218 |
ttccgtcctggaaccgtcgctcttcgtgaaatccgcaagtatcagaagagcaccgagcttctcataaggaagcttccattccaaagattggttcgagaaa |
13576317 |
T |
|
| Q |
117 |
tcgctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatac |
216 |
Q |
| |
|
| ||||||||||||||||| ||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13576318 |
ttgctcaggatttcaaaacggatctccgttttcaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatac |
13576417 |
T |
|
| Q |
217 |
taatctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaactcgctcgcagaatcagaggcgagagggcttagattt |
308 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||| || | |||||||||||||| ||||||||||||| |
|
|
| T |
13576418 |
gaatctttgtgctattcatgctaagagggttactattatgcctaaggatattcaacttgcgagaagaatcagaggcgaaagggcttagattt |
13576509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 26 - 280
Target Start/End: Complemental strand, 34571695 - 34571441
Alignment:
| Q |
26 |
ggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtgaaatcgctcagg |
125 |
Q |
| |
|
||||| ||||| ||||||||||| || |||||||||||||||||||| ||| |||| | || |||||||||||| | |||||||||||||| ||||||| |
|
|
| T |
34571695 |
ggaacagttgctcttcgtgagatacgtaagtatcagaagagtaccgaacttttgatccgtaaacttccattccagcgtcttgttcgtgaaattgctcagg |
34571596 |
T |
|
| Q |
126 |
atttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctg |
225 |
Q |
| |
|
||||||| || ||| | |||||||| ||| ||| ||| || ||||| ||||| || ||||| ||| | |||||||||||||||||||| ||| | || |
|
|
| T |
34571595 |
atttcaagacggatttacgattccagagccatgcggttctcgcacttcaggaagcagcggaagcatatttggttggtttgtttgaggataccaatttgtg |
34571496 |
T |
|
| Q |
226 |
tgccattcatgctaagagggttactatcatgcctaaggatattcaactcgctcgc |
280 |
Q |
| |
|
||| |||||||||||||||||||| || |||||||||||||||||||| |||||| |
|
|
| T |
34571495 |
tgcaattcatgctaagagggttaccattatgcctaaggatattcaacttgctcgc |
34571441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 20 - 244
Target Start/End: Complemental strand, 34579169 - 34578945
Alignment:
| Q |
20 |
cgtcctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtgaaatcg |
119 |
Q |
| |
|
||||||||||| ||||| ||||||||||| || |||||||||||| ||||||| ||| |||| | || |||||||||||| | |||||||||||||| | |
|
|
| T |
34579169 |
cgtcctggaacagttgctcttcgtgagatacgtaagtatcagaagggtaccgaacttttgattcgtaaacttccattccagcgtcttgttcgtgaaattg |
34579070 |
T |
|
| Q |
120 |
ctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaa |
219 |
Q |
| |
|
||||| ||||||| |||||| | ||||||| ||| ||| ||| || ||||| ||||| | ||||||||| | |||||||||||||||||||| || |
|
|
| T |
34579069 |
ctcagaatttcaagacagatttgagattccagagccatgcagttctcgcacttcaggaagcagtggaagcttatttggttggtttgtttgaggataccaa |
34578970 |
T |
|
| Q |
220 |
tctctgtgccattcatgctaagagg |
244 |
Q |
| |
|
| | ||||| ||||||||||||||| |
|
|
| T |
34578969 |
tttgtgtgcaattcatgctaagagg |
34578945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 20 - 244
Target Start/End: Complemental strand, 34584918 - 34584694
Alignment:
| Q |
20 |
cgtcctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtgaaatcg |
119 |
Q |
| |
|
||||||||||| ||||| ||||||||||| || |||||||||||| ||||||| ||| |||| | || |||||||||||| | |||||||||||||| | |
|
|
| T |
34584918 |
cgtcctggaacagttgctcttcgtgagatacgtaagtatcagaagggtaccgaacttttgattcgtaaacttccattccagcgtcttgttcgtgaaattg |
34584819 |
T |
|
| Q |
120 |
ctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaa |
219 |
Q |
| |
|
||||| ||||||| |||||| | ||||||| ||| ||| ||| || ||||| ||||| | ||||||||| | |||||||||||||||||||| || |
|
|
| T |
34584818 |
ctcagaatttcaagacagatttgagattccagagccatgcagttctcgcacttcaggaagcagtggaagcttatttggttggtttgtttgaggataccaa |
34584719 |
T |
|
| Q |
220 |
tctctgtgccattcatgctaagagg |
244 |
Q |
| |
|
| | ||||| ||||||||||||||| |
|
|
| T |
34584718 |
tttgtgtgcaattcatgctaagagg |
34584694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 273
Target Start/End: Complemental strand, 34562910 - 34562654
Alignment:
| Q |
20 |
cgtcctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtgaaatcg |
119 |
Q |
| |
|
||||||||||| ||||| ||||| ||||| || || || ||||||||| |||| ||| |||| | ||||||||||||||| | |||||||||||||| | |
|
|
| T |
34562910 |
cgtcctggaacagttgctcttcgcgagatacgtaaataccagaagagttccgatcttttgatccgtaagcttccattccagcgtcttgttcgtgaaattg |
34562811 |
T |
|
| Q |
120 |
ctcagg---atttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatac |
216 |
Q |
| |
|
|||| | || |||| | ||| | ||||||| || ||| ||| || ||||| ||||| || ||||| ||| | |||||||||||||||||||| |
|
|
| T |
34562810 |
ctcatgttgatctcaagccggatttcagattccagagtcatgcggttctcgcacttcaggaagcagcggaagcatatttggttggtttgtttgaggatac |
34562711 |
T |
|
| Q |
217 |
taatctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaact |
273 |
Q |
| |
|
||| | ||||| |||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
34562710 |
caatttgtgtgcaattcatgctaagagggttaccattatgcctaaggatattcaact |
34562654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 183; Significance: 5e-99; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 11 - 305
Target Start/End: Complemental strand, 3930225 - 3929931
Alignment:
| Q |
11 |
cacagattccgtcctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttc |
110 |
Q |
| |
|
|||||||||||||| ||||| || |||||||||||||||||||||||||||||||| || || ||||| || ||||| ||||||||||| ||| | |||| |
|
|
| T |
3930225 |
cacagattccgtccaggaacagtcgcacttcgtgagatccgcaagtatcagaagagcactgaacttctcattaggaaacttccattccaaagattggttc |
3930126 |
T |
|
| Q |
111 |
gtgaaatcgctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttga |
210 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| || || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3930125 |
gtgaaatcgctcaggatttcaaaactgatcttcgatttcagagtagtgctgtttctgctcttcaagaagctgctgaagcgtatcttgttggtttgtttga |
3930026 |
T |
|
| Q |
211 |
ggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaactcgctcgcagaatcagaggcgagagggcttaga |
305 |
Q |
| |
|
||||| ||||| |||||||||||||||||||| |||||||| ||||| |||||||||||||| || | |||||||||||||| |||||||||| |
|
|
| T |
3930025 |
agatacgaatctttgtgccattcatgctaagagagttactattatgccgaaggatattcaacttgcaagaagaatcagaggcgaaagggcttaga |
3929931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 17 - 273
Target Start/End: Original strand, 21317444 - 21317700
Alignment:
| Q |
17 |
ttccgtcctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtgaaa |
116 |
Q |
| |
|
|||||||| ||||| || || |||||||| ||||||||||| |||||||| || |||||||||||||| || ||||||||||| | ||||||||||||| |
|
|
| T |
21317444 |
ttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgataagaaaacttccattccaacgtcttgttcgtgaaa |
21317543 |
T |
|
| Q |
117 |
tcgctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatac |
216 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
21317544 |
tcgctcaggatttcaaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagcggctgaagcttatcttgttggtttgtttgaagatac |
21317643 |
T |
|
| Q |
217 |
taatctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaact |
273 |
Q |
| |
|
||||| || || |||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
21317644 |
aaatctttgcgctattcatgctaagagagttactattatgcctaaggatattcaact |
21317700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 11 - 305
Target Start/End: Complemental strand, 3928873 - 3928579
Alignment:
| Q |
11 |
cacagattccgtcctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttc |
110 |
Q |
| |
|
||||||||| | || ||||| || ||| | ||||| ||| | |||||||| |||| || |||||||| || ||||| ||||| ||| | ||| | |||| |
|
|
| T |
3928873 |
cacagattcagaccaggaacagtcgcattgcgtgaaatcaggaagtatcaaaagatcactgagcttctcattaggaaacttcctttcaaaagattggttc |
3928774 |
T |
|
| Q |
111 |
gtgaaatcgctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttga |
210 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||| | ||| ||||||||||||||||||||| |||||||| | | |||||||||||||||| |
|
|
| T |
3928773 |
atgaaatcgctcaggatttcaaaactgatctccgattccagatcagcgctgtttctgctcttcaagaaatcgctgaagcgtgtattgttggtttgtttga |
3928674 |
T |
|
| Q |
211 |
ggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaactcgctcgcagaatcagaggcgagagggcttaga |
305 |
Q |
| |
|
|||| ||||| ||||| |||||||||||||| |||||||| |||||||||||||| |||| || |||||||||| ||||||| ||||||| |
|
|
| T |
3928673 |
agatatgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatattaaacttgcatgcagaatcaggtgcgagagagcttaga |
3928579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 303
Target Start/End: Original strand, 21320195 - 21320239
Alignment:
| Q |
259 |
taaggatattcaactcgctcgcagaatcagaggcgagagggctta |
303 |
Q |
| |
|
||||||||||||||| ||| ||| ||||||||| ||||||||||| |
|
|
| T |
21320195 |
taaggatattcaacttgcttgcataatcagaggtgagagggctta |
21320239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 11 - 304
Target Start/End: Complemental strand, 43479938 - 43479645
Alignment:
| Q |
11 |
cacagattccgtcctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttc |
110 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||| | ||| |
|
|
| T |
43479938 |
cacagattccgtcctggaactgttgctcttcgtgagatccgcaagtatcagaagagtaccgagcttctcatcaggaagcttccattccaaagattggtta |
43479839 |
T |
|
| Q |
111 |
gtgaaatcgctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttga |
210 |
Q |
| |
|
| ||||||||||||||||||||||| ||||| | ||||| || || ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
43479838 |
gggaaatcgctcaggatttcaaaactgatctcaggttccagagtagcgctgtttctgctcttcaagaagccgctgaagcttatcttgttggtttgtttga |
43479739 |
T |
|
| Q |
211 |
ggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaactcgctcgcagaatcagaggcgagagggcttag |
304 |
Q |
| |
|
|||||||| || || || |||||||||||||||||||| || |||||||||||||||||||| || | ||||| |||||||||||||||||| |
|
|
| T |
43479738 |
agatactaacctttgcgctattcatgctaagagggttacaattatgcctaaggatattcaacttgcaagaagaattagaggcgagagggcttag |
43479645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 20 - 279
Target Start/End: Original strand, 25865573 - 25865832
Alignment:
| Q |
20 |
cgtcctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtgaaatcg |
119 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| ||||||||||||||||| |||||| |||| | ||||||||||||||| | |||||||||||||| | |
|
|
| T |
25865573 |
cgtcctggaaccgttgctcttcgtgagatccgtaagtatcagaagagtactgagcttttgatccgtaagcttccattccagcgtcttgttcgtgaaattg |
25865672 |
T |
|
| Q |
120 |
ctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaa |
219 |
Q |
| |
|
|||||||||||||||| ||||| |||| || || ||||||| ||| ||||| ||||||||||| ||||||||||| || ||||||||||||||||| |
|
|
| T |
25865673 |
ctcaggatttcaaaacggatctgagatttcagagtcatgctgttcttgcacttcaggaagctgctgaggcttatcttgtgggattgtttgaggatactaa |
25865772 |
T |
|
| Q |
220 |
tctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaactcgctcg |
279 |
Q |
| |
|
| | ||||| ||||||||||||||||| || || ||||| ||||||||||| || ||||| |
|
|
| T |
25865773 |
tttgtgtgcaattcatgctaagagggtaacgattatgccaaaggatattcagcttgctcg |
25865832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 14 - 304
Target Start/End: Original strand, 38799362 - 38799652
Alignment:
| Q |
14 |
agattccgtcctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtg |
113 |
Q |
| |
|
|||||| | |||||||||||||| | | |||||||| |||||||||||||| || |||||||| || | || ||||||||||| | |||||||||| |
|
|
| T |
38799362 |
agattcagacctggaactgttgctttgagagagatccgtaagtatcagaagagcactgagcttctcatccgtaaacttccattccaacgtcttgttcgtg |
38799461 |
T |
|
| Q |
114 |
aaatcgctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgagga |
213 |
Q |
| |
|
|||| ||||| |||||||| |||||||| ||||||| ||||| || ||||| |||||||||||||||||||||||||| | |||||| | ||||| || |
|
|
| T |
38799462 |
aaattgctcaagatttcaagacagatctgagattccagagcagcgcagtttccgctcttcaagaagctgctgaagcttacttggttggtctctttgaaga |
38799561 |
T |
|
| Q |
214 |
tactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaactcgctcgcagaatcagaggcgagagggcttag |
304 |
Q |
| |
|
|| || || ||||| |||||||||||||| ||||| |||||||||||||| ||||| || || | ||||||||||| |||||||||||| |
|
|
| T |
38799562 |
cacaaacctttgtgcaattcatgctaagagagttacaatcatgcctaaggacattcagcttgcaagaagaatcagaggagagagggcttag |
38799652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 14 - 304
Target Start/End: Complemental strand, 38822155 - 38821865
Alignment:
| Q |
14 |
agattccgtcctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtg |
113 |
Q |
| |
|
|||||| | |||||||||||||| | | |||||||| |||||||||||||| || |||||||| || | || ||||||||||| | |||||||||| |
|
|
| T |
38822155 |
agattcagacctggaactgttgctttgagagagatccgtaagtatcagaagagcactgagcttctcatccgtaaacttccattccaacgtcttgttcgtg |
38822056 |
T |
|
| Q |
114 |
aaatcgctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgagga |
213 |
Q |
| |
|
|||| ||||| |||||||| |||||||| ||||||| ||||| || ||||| |||||||||||||||||||||||||| | |||||| | ||||| || |
|
|
| T |
38822055 |
aaattgctcaagatttcaagacagatctgagattccagagcagcgcagtttccgctcttcaagaagctgctgaagcttacttggttggtctctttgaaga |
38821956 |
T |
|
| Q |
214 |
tactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaactcgctcgcagaatcagaggcgagagggcttag |
304 |
Q |
| |
|
|| || || ||||| |||||||||||||| ||||| |||||||||||||| ||||| || || | ||||||||||| |||||||||||| |
|
|
| T |
38821955 |
cacaaacctttgtgcaattcatgctaagagagttacaatcatgcctaaggacattcagcttgcaagaagaatcagaggagagagggcttag |
38821865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 20 - 273
Target Start/End: Original strand, 41943817 - 41944070
Alignment:
| Q |
20 |
cgtcctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtgaaatcg |
119 |
Q |
| |
|
|||||||| || |||||||||||||||||||| || || ||||||||||| || ||| |||| | |||||||||||||| | |||||||||||||| | |
|
|
| T |
41943817 |
cgtcctggtaccgttgcacttcgtgagatccgtaaataccagaagagtactgatcttttgatccgtaagcttccattccaacgtcttgttcgtgaaattg |
41943916 |
T |
|
| Q |
120 |
ctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaa |
219 |
Q |
| |
|
|||| |||||||| || ||||| ||||||| ||| ||||||| ||| ||||| ||||| || ||||||||||| ||||| |||||||||||||| || |
|
|
| T |
41943917 |
ctcaagatttcaagacggatctcagattccagagccatgctgttcttgcacttcaggaagcagcagaagcttatctggttggattgtttgaggataccaa |
41944016 |
T |
|
| Q |
220 |
tctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaact |
273 |
Q |
| |
|
| | ||||| |||||||||||||||||||| || ||||| ||||| |||||||| |
|
|
| T |
41944017 |
tttgtgtgcaattcatgctaagagggttacaattatgccaaaggacattcaact |
41944070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 26 - 270
Target Start/End: Original strand, 26592047 - 26592291
Alignment:
| Q |
26 |
ggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtgaaatcgctcagg |
125 |
Q |
| |
|
||||| || ||||| ||||||||||||||||| |||||||| ||||| ||||| || | || ||||| |||||| | ||||||||||| || ||||||| |
|
|
| T |
26592047 |
ggaaccgtcgcactccgtgagatccgcaagtaccagaagagcaccgaacttctcattcgcaaacttcctttccagcgtcttgttcgtgagattgctcagg |
26592146 |
T |
|
| Q |
126 |
atttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctg |
225 |
Q |
| |
|
||||||| || ||||| || || || ||| |||||| || || || |||||||| || || |||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
26592147 |
atttcaagacggatctccgttttcagagctctgctgtgtcggcgctgcaagaagcggcggaggcttatcttgttggattgtttgaggatactaacctctg |
26592246 |
T |
|
| Q |
226 |
tgccattcatgctaagagggttactatcatgcctaaggatattca |
270 |
Q |
| |
|
|| |||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
26592247 |
cgctattcatgctaagcgtgttactatcatgcctaaggatattca |
26592291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 197 - 304
Target Start/End: Original strand, 38807046 - 38807153
Alignment:
| Q |
197 |
gttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaactcgctcgcagaatcagaggcgaga |
296 |
Q |
| |
|
|||||| | |||||||| || |||| || || |||||||||||||| |||||||||||||||||||| |||||||| || | |||||||||||||||| |
|
|
| T |
38807046 |
gttggtctctttgaggacacaaatccgtgcgcaattcatgctaagagagttactatcatgcctaaggacattcaacttgcaagaagaatcagaggcgaga |
38807145 |
T |
|
| Q |
297 |
gggcttag |
304 |
Q |
| |
|
|||||||| |
|
|
| T |
38807146 |
gggcttag |
38807153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 270
Target Start/End: Original strand, 44343978 - 44344078
Alignment:
| Q |
170 |
cttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattc |
269 |
Q |
| |
|
||||| ||||| ||||| |||||||| || || |||||||||||||| ||| | ||||| ||||||||||||||||| || || ||||| |||||||||| |
|
|
| T |
44343978 |
cttcaggaagcagctgaggcttatctcgtgggattgtttgaggataccaatttgtgtgctattcatgctaagagggtgacgattatgcccaaggatattc |
44344077 |
T |
|
| Q |
270 |
a |
270 |
Q |
| |
|
| |
|
|
| T |
44344078 |
a |
44344078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 44343874 - 44343958
Alignment:
| Q |
20 |
cgtcctggaactgttgcacttcgtgaga--tccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagag |
102 |
Q |
| |
|
||||||||||| ||||| |||||||||| || | |||||||||||||||||| | ||| |||| | |||||||| |||||||| |
|
|
| T |
44343874 |
cgtcctggaaccgttgctcttcgtgagagatctgtaagtatcagaagagtaccaaacttttgatccgtaagcttcccttccagag |
44343958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0197 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: scaffold0197
Description:
Target: scaffold0197; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 17 - 273
Target Start/End: Original strand, 30882 - 31137
Alignment:
| Q |
17 |
ttccgtcctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtgaaa |
116 |
Q |
| |
|
|||||||| ||||| || || |||||||| ||||||||||| |||||||| || |||||||||||||| || |||| |||||| | ||||||||||||| |
|
|
| T |
30882 |
ttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgataagaaaacttc-attccaacgtcttgttcgtgaaa |
30980 |
T |
|
| Q |
117 |
tcgctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatac |
216 |
Q |
| |
|
||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
30981 |
tcgctcaggatttcaaaacctatctcagattccagagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaagatac |
31080 |
T |
|
| Q |
217 |
taatctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaact |
273 |
Q |
| |
|
||||| || || |||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
31081 |
aaatctttgcgctattcatgctaagagagttactattatgcctaaggatattcaact |
31137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 17 - 303
Target Start/End: Original strand, 24860416 - 24860702
Alignment:
| Q |
17 |
ttccgtcctggaactgttgcacttcgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtgaaa |
116 |
Q |
| |
|
|||||||| ||||| ||||||||||| || ||||||||||| || || || || |||||||| || | || ||||||||||| | || |||||||||| |
|
|
| T |
24860416 |
ttccgtcccggaaccgttgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcgttcgtgaaa |
24860515 |
T |
|
| Q |
117 |
tcgctcaggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatac |
216 |
Q |
| |
|
||||||| ||||||||||| ||||| || ||||| || || |||||||||||||||||||||||||||||||||||||| ||||| | ||||| ||||| |
|
|
| T |
24860516 |
tcgctcaagatttcaaaaccgatctccgtttccagagtagcgctgtttctgctcttcaagaagctgctgaagcttatctcgttggactctttgaagatac |
24860615 |
T |
|
| Q |
217 |
taatctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaactcgctcgcagaatcagaggcgagagggctta |
303 |
Q |
| |
|
||||| || || |||||||||||||| ||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24860616 |
aaatctttgcgctattcatgctaagagagttaccattatgcccaaggatattcaactcgctcgcagaatcagaggcgagagggctta |
24860702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 41 - 277
Target Start/End: Original strand, 34748649 - 34748885
Alignment:
| Q |
41 |
cgtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtgaaatcgctcaggatttcaaaacagatc |
140 |
Q |
| |
|
||||||||||| ||||| |||||||| ||||| || || || | || || || |||||| | || |||||||| ||||||||||||||||| || |||| |
|
|
| T |
34748649 |
cgtgagatccgtaagtaccagaagagcaccgaactcctcatccgcaaactccccttccagcgtctggttcgtgagatcgctcaggatttcaagactgatc |
34748748 |
T |
|
| Q |
141 |
ttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaa |
240 |
Q |
| |
|
| || ||||| ||| || || || || || |||||||| ||||| |||||||| |||||| | |||||||||||||| ||||||||||||||||| || |
|
|
| T |
34748749 |
tccgtttccagagctccgccgtgtcggcgctgcaagaagcggctgaggcttatctcgttggtctctttgaggatactaacctctgtgccattcatgccaa |
34748848 |
T |
|
| Q |
241 |
gagggttactatcatgcctaaggatattcaactcgct |
277 |
Q |
| |
|
| | || |||||||||||||||||||| || |||||| |
|
|
| T |
34748849 |
gcgtgtcactatcatgcctaaggatatccagctcgct |
34748885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 131 - 249
Target Start/End: Original strand, 53290720 - 53290838
Alignment:
| Q |
131 |
aaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgcca |
230 |
Q |
| |
|
||||||||||| | ||||| |||| | |||||||||||||||| ||| | ||||||||||||||||||||||||||| |||||||| || ||| ||| |
|
|
| T |
53290720 |
aaaacagatctcaggttccatagcaacgttgtttctgctcttcaaaaagtcgttgaagcttatcttgttggtttgtttgaagatactaacctttgtacca |
53290819 |
T |
|
| Q |
231 |
ttcatgctaagagggttac |
249 |
Q |
| |
|
|||||||||||||| |||| |
|
|
| T |
53290820 |
ttcatgctaagaggattac |
53290838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 132
Target Start/End: Original strand, 40035830 - 40035909
Alignment:
| Q |
53 |
aagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtgaaatcgctcaggatttcaa |
132 |
Q |
| |
|
||||||||||||||||| ||||| |||| |||||||| ||||||||||| | ||||||||||| |||||||| ||||| |
|
|
| T |
40035830 |
aagtatcagaagagtactgagctcttgatcaggaagctcccattccagaggttggttcgtgaaattgctcaggacttcaa |
40035909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 141
Target Start/End: Complemental strand, 44771153 - 44771103
Alignment:
| Q |
91 |
tccattccagagacttgttcgtgaaatcgctcaggatttcaaaacagatct |
141 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
44771153 |
tccattccaacgtcttgttcgtgaaatcgctcaggatttcaaaaccgatct |
44771103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 173 - 264
Target Start/End: Original strand, 40036062 - 40036153
Alignment:
| Q |
173 |
caagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaagga |
264 |
Q |
| |
|
||||| ||||||||||| |||||||||||| | |||||||| ||||| | ||||| || ||||| ||| | |||||||| ||||| ||||| |
|
|
| T |
40036062 |
caagaggctgctgaagcatatcttgttggtctctttgaggacactaacttgtgtgctatccatgccaagcgagttactattatgcccaagga |
40036153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 132
Target Start/End: Original strand, 40045155 - 40045234
Alignment:
| Q |
53 |
aagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtgaaatcgctcaggatttcaa |
132 |
Q |
| |
|
||||| ||||||||||| ||||| |||| |||||||| || |||||||| | ||||||||||| |||||||| ||||| |
|
|
| T |
40045155 |
aagtaccagaagagtactgagctcttgatcaggaagctccccttccagaggttggttcgtgaaattgctcaggacttcaa |
40045234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 170 - 279
Target Start/End: Complemental strand, 7594236 - 7594127
Alignment:
| Q |
170 |
cttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattc |
269 |
Q |
| |
|
||||| ||||| ||||| ||||| || ||||| ||||||||||| || ||||| ||||| ||||||||||||||||| || || ||||| |||||||||| |
|
|
| T |
7594236 |
cttcaggaagcagctgaggcttacctggttggattgtttgaggacaccaatctgtgtgcaattcatgctaagagggtgacaattatgccaaaggatattc |
7594137 |
T |
|
| Q |
270 |
aactcgctcg |
279 |
Q |
| |
|
| || ||||| |
|
|
| T |
7594136 |
agcttgctcg |
7594127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 123 - 204
Target Start/End: Complemental strand, 17769314 - 17769233
Alignment:
| Q |
123 |
aggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggttt |
204 |
Q |
| |
|
||||||||||||||||||| ||||| | || ||| |||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
17769314 |
aggatttcaaaacagatctccgattttagagtagtactgtttctgctcttcaagaagccagtgtagcttatcttgttggttt |
17769233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 42 - 132
Target Start/End: Complemental strand, 7594492 - 7594402
Alignment:
| Q |
42 |
gtgagatccgcaagtatcagaagagtaccgagcttctgataaggaagcttccattccagagacttgttcgtgaaatcgctcaggatttcaa |
132 |
Q |
| |
|
|||||||||| ||||| ||||||||||| |||||| |||| | ||||||||||| ||| | ||||| |||||||| ||||| |||||||| |
|
|
| T |
7594492 |
gtgagatccgtaagtaccagaagagtactgagcttttgatccgcaagcttccatttcagcgtcttgtccgtgaaattgctcaagatttcaa |
7594402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 204
Target Start/End: Complemental strand, 1539263 - 1539185
Alignment:
| Q |
126 |
atttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggttt |
204 |
Q |
| |
|
|||||||||||||||| ||||| | || ||| |||||||| ||||||||||||| || |||||||||||||||||| |
|
|
| T |
1539263 |
atttcaaaacagatctccgattttagagtagtactgtttcttctcttcaagaagccagtgtagcttatcttgttggttt |
1539185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 123 - 204
Target Start/End: Original strand, 27440873 - 27440954
Alignment:
| Q |
123 |
aggatttcaaaacagatcttcgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggttt |
204 |
Q |
| |
|
||||||||||||||||||| ||||| | || || ||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
27440873 |
aggatttcaaaacagatctccgattttagagtagcattgtttctgctcttcaagaagccagtgtagcttatcttgttggttt |
27440954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University