View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17661_low_35 (Length: 297)
Name: NF17661_low_35
Description: NF17661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17661_low_35 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 146; Significance: 6e-77; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 136 - 285
Target Start/End: Complemental strand, 36681737 - 36681588
Alignment:
| Q |
136 |
aatataaccaaacatatgatgagatatattggtgttatgaacagactagtggcttttactagtgaaaagtggacactgagaatacccttaatataaatca |
235 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36681737 |
aatataaccaaacttatgatgagatatattggtgttatgaacagactagtggcttttactagtgaaaagtggacactgagaatacccttaatataaatca |
36681638 |
T |
|
| Q |
236 |
gtgtgtcgctttagacagttggaaaatccataaatagatgtaccgtcttc |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36681637 |
gtgtgtcgctttagacagttggaaaatccataaatagatgtaccgtcttc |
36681588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 23 - 138
Target Start/End: Complemental strand, 36681883 - 36681768
Alignment:
| Q |
23 |
caacatgggagaacagatgaatgaaaaacaaaatcaacttgcattattgtctctagagatattctaaattccgtgaaacacaaaaacaaagtttagaaat |
122 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36681883 |
caacatgggagaacaaatgaataaaaaacaaaatcaacttgcattattgtctctagagatattctaaattccgtgaaacacaaaaacaaagtttagaaat |
36681784 |
T |
|
| Q |
123 |
tggatttacagtgaat |
138 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
36681783 |
tggatttacagtgaat |
36681768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University