View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17661_low_4 (Length: 622)
Name: NF17661_low_4
Description: NF17661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17661_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 9 - 606
Target Start/End: Original strand, 21826640 - 21827228
Alignment:
| Q |
9 |
agtgagatgaatgcaaatgaagtaaagaattcacaatcactcttatccttgtttagacat-aaacttatgttattctaagaacatgatttcatgctcaaa |
107 |
Q |
| |
|
||||| ||||||||| | ||||||| ||||||||||||||| ||||||||||||||||| ||||| ||||||||||| || | ||||||||||||||| |
|
|
| T |
21826640 |
agtgacatgaatgcagagtaagtaaaaaattcacaatcactcatatccttgtttagacattaaactaatgttattctactaatacgatttcatgctcaaa |
21826739 |
T |
|
| Q |
108 |
taaccaaaccttaaaagcaagtgattgatattgaacacctagcaagaatatcct--------tgcataccaactaaagccaatcagcctttaaaccacaa |
199 |
Q |
| |
|
||||||||||||||| |||| || |||||||| |||||| ||||||| |||||||||||||||| || |||||||| ||| ||||| |
|
|
| T |
21826740 |
taaccaaaccttaaat--aagtagttcatattgaatacctaggtgtgatatcctattatccttgcataccaactaaagtcagtcagccttcaaaacacaa |
21826837 |
T |
|
| Q |
200 |
tatcctacacataacagagacagccttcaaatcatgttctaaagtgaatactagacgataaactcattgaaaaaataaataatatggattaaaatttaga |
299 |
Q |
| |
|
||||||||| ||||| ||||| |||||||||||||||||||| || |||| || ||||||| ||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
21826838 |
tatcctaca--taacaaagacaaccttcaaatcatgttctaaatcaaacactaaacaataaacttattgaaaaaataaataacatggattcaaatttaga |
21826935 |
T |
|
| Q |
300 |
actagtatctcaccatttcaaagacaattgtagtagatgaaatggaatgctattaaatcaatcaaagatataaaacttcaattaggtaaagatgctgaat |
399 |
Q |
| |
|
|||| |||||||| ||| | ||||||||||| ||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
21826936 |
actaacatctcacctttttagagacaattgtactagatgatatggaatgctattaaataaatcaaagatagaaaacttcaattaggtaaagatgctgcat |
21827035 |
T |
|
| Q |
400 |
aaaacaaagaaaaggtgttaattgttattatctaaggtttctaaaaagtttaaatttagtatattgaataatggcccatgagggattcaatcgtaagtct |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||| |
|
|
| T |
21827036 |
aaaacaaagaaaaggtgttaattgttatta---------tctaaaaagtttaaatttagtatattgaataactggtcatgagggattcactcgtaagtct |
21827126 |
T |
|
| Q |
500 |
caacttcacaaaatacataaatcttcaagttgggattctaatcgaacacaagctaacaaactataaagttgtcaaggaaacaaacaaaacaaaaattctt |
599 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||| ||||| ||| ||||| |||||| |||| ||||||| ||||||||||||||||| |||| |
|
|
| T |
21827127 |
caacttcacaaaatacataaatcttcatgtttggat-----tcgaaaacacgctaataaactacaaagctgtcaagaaaacaaacaaaacaaaatctctt |
21827221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 9 - 423
Target Start/End: Original strand, 39602478 - 39602897
Alignment:
| Q |
9 |
agtgagatgaatgcaaatgaagtaaagaattcacaatcactcttatccttgtttagacat-aaacttatgttattctaagaacatgatttcatgctcaaa |
107 |
Q |
| |
|
||||| ||||||||||| |||||||| ||||||||||||||| ||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
39602478 |
agtgacatgaatgcaaaggaagtaaaaaattcacaatcactcatatccttgtttagacattaaactaatgttattctactaacatgatttcatgctcaaa |
39602577 |
T |
|
| Q |
108 |
taaccaaaccttaaaagcaagtgattgatattgaacacctagcaagaatatcct--------tgcataccaactaaagccaatcagcctttaaaccacaa |
199 |
Q |
| |
|
||| ||||||||||| ||||| ||||||||||| |||||| ||||||| |||||||||||||||| || |||||||| ||| ||||| |
|
|
| T |
39602578 |
taatcaaaccttaaa--caagtagttgatattgaatacctaggtgtgatatcctattatccttgcataccaactaaagtcagtcagccttcaaaacacaa |
39602675 |
T |
|
| Q |
200 |
tatcctacacataacagagacagccttcaaatcatgttctaaagtgaatactagacgataaactcattgaaaaaataaataatatggattaaaatttaga |
299 |
Q |
| |
|
||||||||| ||||| ||||| |||||||||||||||||||| || |||| || ||||||| ||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
39602676 |
tatcctaca--taacaaagacaaccttcaaatcatgttctaaatcaaacactaaacaataaacttattgaaaaaataaataacatggattcaaatttaga |
39602773 |
T |
|
| Q |
300 |
actagtatctcaccatttcaaagacaattgtagtagatgaaatggaatgctattaaatcaatcaaagatataaaacttcaattaggtaaagatgctgaat |
399 |
Q |
| |
|
|||| |||||||| ||| | ||||||||||| ||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
39602774 |
actaacatctcacctttttagagacaattgtactagatgatatggaatgctattaaataaatcaaagatagaaaacttcaattaggtaaagatgctgcat |
39602873 |
T |
|
| Q |
400 |
aaaacaaagaaaaggtgttaattg |
423 |
Q |
| |
|
|||||||||||||||| ||||||| |
|
|
| T |
39602874 |
aaaacaaagaaaaggtattaattg |
39602897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 538 - 606
Target Start/End: Original strand, 39602892 - 39602960
Alignment:
| Q |
538 |
taatcgaacacaagctaacaaactataaagttgtcaaggaaacaaacaaaacaaaaattcttatgaatg |
606 |
Q |
| |
|
|||| ||| ||| |||||||||||| |||| ||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
39602892 |
taattgaaaacacgctaacaaactacaaagctgtcaagaaaacaaacaaaacaaaatctcttatgaatg |
39602960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 336 - 417
Target Start/End: Complemental strand, 46974301 - 46974220
Alignment:
| Q |
336 |
atgaaatggaatgctattaaatcaatcaaagatataaaacttcaattaggtaaagatgctgaataaaacaaagaaaaggtgt |
417 |
Q |
| |
|
|||||| |||||||||||||||||| |||||| || ||||| || ||| ||| |||||||| || ||||| |||||| |||| |
|
|
| T |
46974301 |
atgaaaaggaatgctattaaatcaaccaaagacatcaaactccagttaagtatagatgctgcatgaaacagagaaaaagtgt |
46974220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 8e-38; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 209 - 349
Target Start/End: Complemental strand, 38414849 - 38414709
Alignment:
| Q |
209 |
cataacagagacagccttcaaatcatgttctaaagtgaatactagacgataaactcattgaaaaaataaataatatggattaaaatttagaactagtatc |
308 |
Q |
| |
|
||||||| ||||||||||||||||||||| | || |||||||| ||||||||| |||||||||||||||||| ||||| |||||||||||||||||| | |
|
|
| T |
38414849 |
cataacaaagacagccttcaaatcatgttttgaatcgaatactaaacgataaacacattgaaaaaataaataacatggaataaaatttagaactagtagc |
38414750 |
T |
|
| Q |
309 |
tcaccatttcaaagacaattgtagtagatgaaatggaatgc |
349 |
Q |
| |
|
||||| |||| ||||||||||| ||||||||| ||||||| |
|
|
| T |
38414749 |
tcaccttttctgagacaattgtactagatgaaaaggaatgc |
38414709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 245 - 360
Target Start/End: Complemental strand, 9010320 - 9010205
Alignment:
| Q |
245 |
gaatactagacgataaactcattgaaaaaataaataatatggattaaaatttagaactagtatctcaccatttcaaagacaattgtagtagatgaaatgg |
344 |
Q |
| |
|
|||||||| ||||||||| |||||||||| |||||| |||||||||||||||||| ||||| |||||| ||||| |||||| | || ||||||||| || |
|
|
| T |
9010320 |
gaatactaaacgataaacacattgaaaaattaaatatcatggattaaaatttagaagtagtagctcaccttttcagagacaactatactagatgaaaagg |
9010221 |
T |
|
| Q |
345 |
aatgctattaaatcaa |
360 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
9010220 |
tatgcaattaaatcaa |
9010205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 386 - 446
Target Start/End: Complemental strand, 9010203 - 9010143
Alignment:
| Q |
386 |
taaagatgctgaataaaacaaagaaaaggtgttaattgttattatctaaggtttctaaaaa |
446 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
9010203 |
taaagatgctgcataaaacaaagaaaaggtgttgattgttattatctaaggtttctaaaaa |
9010143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 70 - 129
Target Start/End: Complemental strand, 9010531 - 9010472
Alignment:
| Q |
70 |
aacttatgttattctaagaacatgatttcatgctcaaataaccaaaccttaaaagcaagt |
129 |
Q |
| |
|
|||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
9010531 |
aacttatgttattccaataacatgattgcatgctcaaataaccaaaccttaaaagcaagt |
9010472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 8e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 15 - 129
Target Start/End: Original strand, 11197895 - 11198009
Alignment:
| Q |
15 |
atgaatgcaaatgaagtaaagaattcacaatcactcttatccttgtttagacataaacttatgttattctaagaacatgatttcatgctcaaataaccaa |
114 |
Q |
| |
|
||||||||||| |||| ||||| | ||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
11197895 |
atgaatgcaaaagaagcaaagatcttacaatcactcttatccttgtttagacatagacttatgttattctactaacatggtttcatgctcaaataaccaa |
11197994 |
T |
|
| Q |
115 |
accttaaaagcaagt |
129 |
Q |
| |
|
| | ||||||||||| |
|
|
| T |
11197995 |
atcgtaaaagcaagt |
11198009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 407 - 446
Target Start/End: Original strand, 23950530 - 23950569
Alignment:
| Q |
407 |
agaaaaggtgttaattgttattatctaaggtttctaaaaa |
446 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23950530 |
agaaaaggtgttaattgttattatctaaggtttctaaaaa |
23950569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 480 - 540
Target Start/End: Original strand, 23950663 - 23950724
Alignment:
| Q |
480 |
agggattcaatcgtaagtctcaacttcacaaaatacat-aaatcttcaagttgggattctaa |
540 |
Q |
| |
|
||||||||||||||||||||||||| || |||||| || || | |||||||||||||||||| |
|
|
| T |
23950663 |
agggattcaatcgtaagtctcaactccataaaatagatcaatttttcaagttgggattctaa |
23950724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 606
Target Start/End: Original strand, 23950841 - 23950889
Alignment:
| Q |
558 |
aactataaagttgtcaaggaaacaaacaaaacaaaaattcttatgaatg |
606 |
Q |
| |
|
||||| |||| | ||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
23950841 |
aactacaaagctatcaagaaaaccaacaaaacaaaaattcttatgaatg |
23950889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University