View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17661_low_41 (Length: 274)
Name: NF17661_low_41
Description: NF17661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17661_low_41 |
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| [»] scaffold0450 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 8762996 - 8763262
Alignment:
| Q |
1 |
acattttctctggtcaagtttggtatattcatgatctccagaattttctttggaacagcctctgaattagggaaaatataaacacaagaaaaacacattg |
100 |
Q |
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| T |
8762996 |
acattttctctggtcaagtttggtatattcatgatctccagaattttctttggaacagcctctgaattagggaaaatataaacacaagaaaaacacattg |
8763095 |
T |
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| Q |
101 |
taaaactgattagaattaaaaagcctttcataagaaaaatatttttaaaagatgacttactttccaatccaatttggttaacagcaagcagaaacatttt |
200 |
Q |
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| T |
8763096 |
taaaactaattagatttaaaaagcctttcataagaaaaatatttttaaaagatgacttactttccaatccaatttggttaacagcaagcagaaacatttt |
8763195 |
T |
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| Q |
201 |
gtggagataaggtgtccaaacaagtttttgtttcttaacaacttgaatatctttctctcctttgctt |
267 |
Q |
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| T |
8763196 |
gtggagataaggtgtccaaacaagtttttgtttcttaacaacttgaatatctttctctccttggctt |
8763262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 8789475 - 8789577
Alignment:
| Q |
1 |
acattttctctggtcaagtttggtatattcatgatctccagaattttctttggaacagcctctgaattagggaaaatataaacacaagaaaaacacattg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8789475 |
acattttctctggtcaagtttggtatattcatgatctccagaattttctttggaacagcctctgaattagggaaaatataaacacaagaaaaacacattg |
8789574 |
T |
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| Q |
101 |
taa |
103 |
Q |
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||| |
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| T |
8789575 |
taa |
8789577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0450 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0450
Description:
Target: scaffold0450; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 8884 - 8819
Alignment:
| Q |
1 |
acattttctctggtcaagtttggtatattcatgatctccagaattttctttggaacagcctctgaa |
66 |
Q |
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| T |
8884 |
acattttctcttgttaagtttggaacattcattatctccaaaattttctttggcacaacatctgaa |
8819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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