View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17661_low_42 (Length: 266)
Name: NF17661_low_42
Description: NF17661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17661_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 15 - 248
Target Start/End: Original strand, 52699304 - 52699537
Alignment:
| Q |
15 |
cagagaaggtcaaagttacaaaggtttgtagagtaaggaactaaaattgaataaaacagtatctagggaacgaagtcaaaccttaatataaccagaagtg |
114 |
Q |
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| T |
52699304 |
cagagaaggtcaaagttacaaagttttgtagagtaaggaactaaaattgaataaaacagtatctagggaacgaagtcaaaccttaatataaccagaagtg |
52699403 |
T |
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| Q |
115 |
taatttagtcttagttttatttgggtctataagattggagcaaattaattttgcaggttttttgacaaagcagcagttataacagaaaaagacacagtta |
214 |
Q |
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| T |
52699404 |
taatttagtcttagttttatttgggtctataagattggagcaaattaattttgcaggttttttgacaaagcagcagttataacagaaaaagacacagtta |
52699503 |
T |
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| Q |
215 |
gtaacagatggagtgtatgcacagtgacacaagt |
248 |
Q |
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| T |
52699504 |
gcaacagatggagtgtatgcacagtgacacaagt |
52699537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 143 - 248
Target Start/End: Original strand, 52722728 - 52722833
Alignment:
| Q |
143 |
ataagattggagcaaattaattttgcaggttttttgacaaagcagcagttataacagaaaaagacacagttagtaacagatggagtgtatgcacagtgac |
242 |
Q |
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| T |
52722728 |
ataagattggagcaaattaattttgcaggttttttgacaaagcagcagttataacagaaaaagacacagttagcaacagatggagtgtatgcacagtgac |
52722827 |
T |
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| Q |
243 |
acaagt |
248 |
Q |
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| T |
52722828 |
acaagt |
52722833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 143 - 249
Target Start/End: Original strand, 52713706 - 52713812
Alignment:
| Q |
143 |
ataagattggagcaaattaattttgcaggttttttgacaaagcagcagttataacagaaaaagacacagttagtaacagatggagtgtatgcacagtgac |
242 |
Q |
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||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||| | || |||||||||||||||||||||||||| |
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| T |
52713706 |
ataagatcggagcaaattaattttgcagattttttgacaaagcagcagttattacagaaaaggacacactcagcaacagatggagtgtatgcacagtgac |
52713805 |
T |
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| Q |
243 |
acaagtg |
249 |
Q |
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||||||| |
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| T |
52713806 |
acaagtg |
52713812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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