View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17661_low_44 (Length: 264)
Name: NF17661_low_44
Description: NF17661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17661_low_44 |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 2915876 - 2916129
Alignment:
| Q |
1 |
ccaacatgtaaggatgacaacatagcttacgcagttgcataacaacattgttaagagaaatctgattcattgaacatatgaaacactttcttaagatact |
100 |
Q |
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| T |
2915876 |
ccaacatgtaaggatgacaacatagcttacgcagttgcataacaacattgttaagagaaatctgattcattgaacatatgaaacactttcttaagatact |
2915975 |
T |
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| Q |
101 |
gttgacacattttgcttctttccttatgaagcaacagttaagaatagcacaacaaaaggttagtttgctaaaacatcaatcttacttgtgctccaccacg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2915976 |
gttgacacattttgcttctttccttatgaagcaacagttaagaatagcacaacaaaaggttagtttgctaaaacatcaatcttacttgtgctccaccacg |
2916075 |
T |
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| Q |
201 |
gcgagttaatatgtcataattacgagtcaaaattgccttataatattctctctg |
254 |
Q |
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| T |
2916076 |
gcgagttaatatgtcataattacgagtcaaaattgccttataatattctctctg |
2916129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 178 - 254
Target Start/End: Complemental strand, 49042678 - 49042602
Alignment:
| Q |
178 |
aatcttacttgtgctccaccacggcgagttaatatgtcataattacgagtcaaaattgccttataatattctctctg |
254 |
Q |
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| T |
49042678 |
aatcttgcctgtgcaccaccacggcgggttaatatctgataattacgggtcaaaattgccttataatattctttctg |
49042602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 49042851 - 49042788
Alignment:
| Q |
3 |
aacatgtaaggatgacaacatagcttacgcagttgcataacaacattgttaagagaaatctgat |
66 |
Q |
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| T |
49042851 |
aacatgtaagcatgacaacagagcttacgcagttccataacaacgttgataagagaaatctgat |
49042788 |
T |
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