View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17661_low_45 (Length: 255)
Name: NF17661_low_45
Description: NF17661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17661_low_45 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 12 - 237
Target Start/End: Complemental strand, 4765145 - 4764920
Alignment:
| Q |
12 |
acagagctacgcaagagacaatacttgattcgaattctgatcaacaaataacaaccgtgacaatctcaaaacaagaagaagagtaaacccataattaata |
111 |
Q |
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| T |
4765145 |
acagagctacgcaagagacaatacttgattcgaattctgatcaacaaataacaaccgtgacaatctcaaaacaagaagaagagtaaacccataattaata |
4765046 |
T |
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| Q |
112 |
ccttatgttaaaatataaatagtggcacttagaaggaagaaacaagacaactcaattcagtgtgaaggaaaaagcagatacaacaccttttatctctaag |
211 |
Q |
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| T |
4765045 |
ccttatgttaaaatataaatagtggcacttagaaggaagaaacaagacaactcaattcagtgtgaaggaaaaagcagatacaacaccttttatctctaag |
4764946 |
T |
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| Q |
212 |
aattaagatataaatgatagcaattg |
237 |
Q |
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| T |
4764945 |
aattaagatataaatgatagcaattg |
4764920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 37 - 170
Target Start/End: Original strand, 12072676 - 12072809
Alignment:
| Q |
37 |
tgattcgaattctgatcaacaaataa-caaccgtgacaatctcaaaacaagaagaagagtaaacccataattaataccttatgttaaa--atataaatag |
133 |
Q |
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| T |
12072676 |
tgattcgaattttgatcaagaaataaacaaccgtgacaatctcaaaataagtagagga---aacccataattaataccttatgttaaaatatatatatag |
12072772 |
T |
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| Q |
134 |
tggcacttagaaggaagaaacaagacaactcaattca |
170 |
Q |
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| T |
12072773 |
tgtcacttggaaggaagaaacaagaaaactcaattca |
12072809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 37 - 128
Target Start/End: Original strand, 12065892 - 12065980
Alignment:
| Q |
37 |
tgattcgaattctgatcaacaaataacaaccgtgacaatctcaaaacaagaagaagagtaaacccataattaataccttatgttaaaatata |
128 |
Q |
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| T |
12065892 |
tgattcgaattttgatcaacaaataacaaccgtgacaatcttaa---aataagtagaggaaacccataattaataccttatgttaaaatata |
12065980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 184
Target Start/End: Original strand, 12066002 - 12066056
Alignment:
| Q |
130 |
atagtggcacttagaaggaagaaacaagacaactcaattcagtgtgaaggaaaaa |
184 |
Q |
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| T |
12066002 |
atagtgtcacttggaaggaagaaacaagaaaactcaattcaacgtgaaggcaaaa |
12066056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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