View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17661_low_5 (Length: 605)
Name: NF17661_low_5
Description: NF17661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17661_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 560; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 1 - 596
Target Start/End: Complemental strand, 47969821 - 47969227
Alignment:
| Q |
1 |
ctgaaccaaccctgcagttgatgagttccatccaaattgatgtgacattggaattattgcaatactcaaattcacctgtgccccaattaaacacaagaaa |
100 |
Q |
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| T |
47969821 |
ctgaaccaaccctgctgttgatgagttccatccaaattgatgtgacattggaattattgcaatactcaaattcacctgtgccc-aattaaacacaagaaa |
47969723 |
T |
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| Q |
101 |
attctaacactgccattcaaactcattgtaataaaaaatcaattttgaattatgggtttgcaataataatgaaaaagaagattaaagtaactaagaaaga |
200 |
Q |
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| T |
47969722 |
attctaacactgccattcaaactcattgtaagaaaaaatcaattttgaattatgggtttgcaataataatgaaaaagaagattaaagtaactaagaaaga |
47969623 |
T |
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| Q |
201 |
accttgtccatgttacagataacaaaggcaagtgaagtagttccaatgagtttgtatctaaggggaagattcttccatgatggccaattcccagacaagt |
300 |
Q |
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| T |
47969622 |
accttgtccatgttacagataacaaaggcaagtgaagtagttccaatgagtttgtatctaaggggaagattcttccatgatggccaattgccagacaagt |
47969523 |
T |
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| Q |
301 |
gttgttcaagttcaacatcatcatcgaggtcggagagagcattgattttggtcttggacagtttattatgggtttctttgatatcttgttgagtattact |
400 |
Q |
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| T |
47969522 |
gttgttcaagttcaacatcatcgtcgaggtcggagagagcattgattttggtcttggacagtttattatgggtttctttgatatcttgttgagtattact |
47969423 |
T |
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| Q |
401 |
acatgaaactactgttctttgtttggttctgtggatgagtttggaaggtgtgaagtggaagtgaaaacgttgaaaagtggttttgataaaagggttgtgt |
500 |
Q |
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| T |
47969422 |
acatgaaactactgttctttgtttggttctgtggatgagtttggaaggtgtgaagtggaagtgaaaacgttgaaaagtggttttgataaaagggttgtgt |
47969323 |
T |
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| Q |
501 |
gaatttattctttgattctgagtttgaggttgagtaaagaaacatgatgatttactgttatgtggtttgagagtgattatggtcattttgatgatg |
596 |
Q |
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| T |
47969322 |
gaatttgttatttgattctgagtttgaggttgagtaaagaaacatgatgatttactattatgtggtttgagagtgattatggtcattttgatgatg |
47969227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 438 - 502
Target Start/End: Original strand, 8375672 - 8375736
Alignment:
| Q |
438 |
agtttggaaggtgtgaagtggaagtgaaaacgttgaaaagtggttttgataaaagggttgtgtga |
502 |
Q |
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| T |
8375672 |
agtttggaaggtgtgaagtggaagtgaaagtgttgaaaacaagttttgatagaaggaatgtgtga |
8375736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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