View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17661_low_52 (Length: 239)
Name: NF17661_low_52
Description: NF17661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17661_low_52 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 7601726 - 7601509
Alignment:
| Q |
1 |
ttttacatcattcaatcaatctatgagttcttatctctcttattgacatcaatttgatctcataataggagtcttggaaaagaaaaattaattgtatatc |
100 |
Q |
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| T |
7601726 |
ttttacatcattcaatcaatctatgtgttcttatctctcttattgacatcaatttgatctcataataggagtcttggaaaagaaaaattaattgtatatc |
7601627 |
T |
|
| Q |
101 |
gaaagcactgactatgtgcaaattatgtaattgctcaccaaatgtggttaaattattactattttattttttcagaaaggactgcatataagtctctgca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
7601626 |
gaaagcactgactatgtgcaaattatgtaattgctcaccaaatgtggttaaattat---tattttatttcttcagaaaggactgcatataagtctctgca |
7601530 |
T |
|
| Q |
201 |
cacgtgtagttatgatgcaaa |
221 |
Q |
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||||||||||||||||||||| |
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| T |
7601529 |
cacgtgtagttatgatgcaaa |
7601509 |
T |
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