View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17661_low_55 (Length: 235)
Name: NF17661_low_55
Description: NF17661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17661_low_55 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 39951737 - 39951958
Alignment:
| Q |
1 |
ttctggcatgtatctgatgtattttcacatgacacaagctcaaatgcatgcacaactgcaaacatttacttcgtaagaagaattcatgtatttttcatta |
100 |
Q |
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| T |
39951737 |
ttctggcatgtatctgatgtattttcacatgacacaagctcaaatgcatgcacaactgcaaacatttacttcgtatgaagaattcatgtatttttcatta |
39951836 |
T |
|
| Q |
101 |
tgctgttctaggtatttttgggattacgtagaaaggaaacaacttgaatggtctgtgtcaagtgaatggtctccaaatggatgctatttcatgacagcaa |
200 |
Q |
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| T |
39951837 |
tgctgttctaggtatttttgggattacgtagaaaggaaacaacttgaatggtctgtgtcaagtgaatggtctccaaatgggtgctatttcatgacagcaa |
39951936 |
T |
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| Q |
201 |
ccacaacaccgaggcttcaagt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
39951937 |
ccacaacaccgaggcttcaagt |
39951958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 34230927 - 34230692
Alignment:
| Q |
1 |
ttctggcatgtatctgatgtattttcacatgacacaagctcaaatgcatgcacaactgcaaacatttacttcgtaagaagaattcatgtatttttcatta |
100 |
Q |
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|||||||| |||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||| ||||||| || |||||||||| |||||||||| |
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| T |
34230927 |
ttctggcaagtatctgatgtattttcaaatgacacaagctcagatgcatgcacaattgcaaacatttgcttcgtatgaggaattcatgtgtttttcatta |
34230828 |
T |
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| Q |
101 |
tgctgttctaggtatttttgggattacgtagaaaggaaacaact---------------tgaatggtctgtgtcaagtgaatggtctccaaatggatgct |
185 |
Q |
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|| ||||||||||| |||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||| |||| |||| |
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| T |
34230827 |
tgttgttctaggta-ttttgggattacgtggaaaggaaacagcttgcatcaaccaaagctgaatggtctgtgtcaagtgaatggtctccagatgggtgct |
34230729 |
T |
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| Q |
186 |
atttcatgacagcaaccacaacaccgaggcttcaagt |
222 |
Q |
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|||||||||||||||| ||| | || ||||||||||| |
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| T |
34230728 |
atttcatgacagcaacaacagctccaaggcttcaagt |
34230692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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