View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17661_low_56 (Length: 234)
Name: NF17661_low_56
Description: NF17661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17661_low_56 |
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Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 27425007 - 27425227
Alignment:
| Q |
1 |
ctcagagcataagatattatgggtccactttagtgcatatccattatatcaagtatgatacatcgcaacgttgtagctttctacaacgctaggatgtgtc |
100 |
Q |
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| T |
27425007 |
ctcagagcataagatattatggttccactttactgcatatccattataccaagtatgatacatcgcaacgttgtagctttctacatcgctaggatgtgtc |
27425106 |
T |
|
| Q |
101 |
atttggtactttctcttatgagatatcgaccttatctcttgtgaatcaacatattcctttcctcgtactacaatagttggagtcagctcatgtacactta |
200 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
27425107 |
atttggtactttctcttatgagatgtcgaccttatctcttgtgaatcaacatattcctttccttgtactacaatagttggagtcagctcatctacactta |
27425206 |
T |
|
| Q |
201 |
gtccctaagacatgcaaataa |
221 |
Q |
| |
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||||| ||||||||||||||| |
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| T |
27425207 |
gtccccaagacatgcaaataa |
27425227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 22 - 122
Target Start/End: Complemental strand, 32401412 - 32401312
Alignment:
| Q |
22 |
ggtccactttagtgcatatccattatatcaagtatgatacatcgcaacgttgtagctttctacaacgctaggatgtgtcatttggtactttctcttatga |
121 |
Q |
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| T |
32401412 |
ggtccactttaatgcatatcgattagaccaagtctgatatgtcgcaacattgtagctttctacatcgcgaggttgtgtcctttgatactttctcctatga |
32401313 |
T |
|
| Q |
122 |
g |
122 |
Q |
| |
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| |
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| T |
32401312 |
g |
32401312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 223
Target Start/End: Original strand, 18399273 - 18399481
Alignment:
| Q |
17 |
ttatgggtccactttagtgcatatccattatatc-aagtatgatacatcgcaacgttgtagctttctacaacgctaggatgtgtcatttggtactttctc |
115 |
Q |
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||||||| |||||||| |||||||||| | | | |||| || ||| || ||||||| |||||| ||||| ||| | |||||||| || ||||| |||| |
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| T |
18399273 |
ttatgggcccactttaatgcatatccaacaaaaccaagtctggtacgtcacaacgttatagcttcctacatcgccatgatgtgtcgttcagtactatctc |
18399372 |
T |
|
| Q |
116 |
ttatgagatatcgaccttatctcttgtgaatcaacatattcctt--tcctcgtactacaatagttggagtcagctcatgtacacttagtccctaagacat |
213 |
Q |
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|||||| | | |||||||||||| ||||||||||||||||| |||| |||||||| | ||||| || |||||||| ||||||||| |||| | | |
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| T |
18399373 |
ctatgagctggcagccttatctcttg-gaatcaacatattccttcttccttgtactacattccctggagccaactcatgtaaacttagtccttaaggctt |
18399471 |
T |
|
| Q |
214 |
gcaaataatg |
223 |
Q |
| |
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|||||||||| |
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|
| T |
18399472 |
gcaaataatg |
18399481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 224
Target Start/End: Complemental strand, 53151310 - 53151214
Alignment:
| Q |
129 |
accttatctcttgtgaatcaacatattcctt--tcctcgtactacaatagttggagtcagctcatgtacacttagtccctaagacatgcaaataatga |
224 |
Q |
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||||||||||||| ||||||||||||||||| |||| |||| ||| | |||||| ||| ||||||| |||| |||| ||||||||||||||||||| |
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| T |
53151310 |
accttatctcttg-gaatcaacatattccttattccttgtacaacattcattggagccaggtcatgtaaacttggtccttaagacatgcaaataatga |
53151214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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