View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17661_low_6 (Length: 573)
Name: NF17661_low_6
Description: NF17661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17661_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-156; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 33 - 369
Target Start/End: Original strand, 14130474 - 14130807
Alignment:
| Q |
33 |
ctctaccatactttgattaagagaggaccactttgcactctgatattagacatgtttttaaaatatgaaaatggccttatatgttcttttcttcaccatt |
132 |
Q |
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| T |
14130474 |
ctctaccatactttgattaggagaggaccactttccactctgatattagacatgtttttaaaatatgaaaatggccttatatgttcttttcttcaccatt |
14130573 |
T |
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| Q |
133 |
gcaacgacaaaaaatgtagaagagcataagataaaagagcctgataaaacaaatctagaagaccaagaattctttattgactttcatac-nnnnnnntaa |
231 |
Q |
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| T |
14130574 |
gcaacgacaataaatgtagaagagcataagataaaagagcctgataaaacaaatctagaagaccaagaattctttattgactttcatacaaaaaaaataa |
14130673 |
T |
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| Q |
232 |
aaggaggtgcaagtgcaattatagcaaagataaaaagagcaatatgaagaatgtacgtagaagatctgaagatggaaaagccaaccaaaccctagtgcaa |
331 |
Q |
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| T |
14130674 |
aaggaggtgcaagtgcaattatagcaaagataaaaagagcaatatgaagaat----gtagaagatctgaagatggaaaagccaaccaaaccctagtgcaa |
14130769 |
T |
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| Q |
332 |
ttaaatatttatccccataacattacagatgataccgt |
369 |
Q |
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| T |
14130770 |
ttaaatatttatccccataacattacagatgataccgt |
14130807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 442 - 557
Target Start/End: Original strand, 14130823 - 14130942
Alignment:
| Q |
442 |
aatctcatcaccacctccatattttaagatgaattttaattatcatagttagctccttaatcctttaatcttagctct----gccccttccctctctgca |
537 |
Q |
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| T |
14130823 |
aatctcatcaccacctccatattttaaaatgaattttaattatcatagttagctccttaatcctttaatcttagctctgctggccccttccctctctgca |
14130922 |
T |
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| Q |
538 |
tatcccttcctggatatatc |
557 |
Q |
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| T |
14130923 |
tatcccttcctggatatatc |
14130942 |
T |
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