View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17661_low_63 (Length: 216)
Name: NF17661_low_63
Description: NF17661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17661_low_63 |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 30 - 197
Target Start/End: Original strand, 50783500 - 50783667
Alignment:
| Q |
30 |
aaaaagaaataaaattctattaaaaagtggtttactaatttacttgatcaaaataaaagcatatattttcaaaacataatttctatatttaaattcttta |
129 |
Q |
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| T |
50783500 |
aaaaaaaaaaaaaaatctattaaaaagtggtttactaatttacttgatcaaaataaaagcatatattttcaaaacataatttctatatttaaattcttta |
50783599 |
T |
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| Q |
130 |
atcggctctctaaagacaccaattaacaaaccctaaacaatatagaaaatatttctataccaactaat |
197 |
Q |
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| T |
50783600 |
atcggctctctaaagacaccaattaacaaaccctaaacaatatagaaaatatttctataccaactaat |
50783667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 124
Target Start/End: Original strand, 36436580 - 36436690
Alignment:
| Q |
14 |
gcataggttaagcatcaaaaagaaataaaattctattaaaaagtggtttactaatttacttgatcaaaa-taaaagcatatattttcaaaacataatttc |
112 |
Q |
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| T |
36436580 |
gcatgggttaaacatctaaaataaataagattttattaaaaagtagtgcaataatt-atttgatcaaaaataaaagtttatatttacaagacataatttc |
36436678 |
T |
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| Q |
113 |
tatatttaaatt |
124 |
Q |
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| T |
36436679 |
tatttttaaatt |
36436690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 130
Target Start/End: Complemental strand, 37561562 - 37561500
Alignment:
| Q |
69 |
ttacttgatcaaaa-taaaagcatatattttcaaaacataatttctatatttaaattctttaa |
130 |
Q |
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| T |
37561562 |
ttacttgatcaaaagtaaaatcttatattttcaaaataaaatttctatttataaattctttaa |
37561500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 130
Target Start/End: Complemental strand, 41760451 - 41760340
Alignment:
| Q |
19 |
ggttaagcatcaaaaagaaataaaattctattaaaaagtggtttactaatttacttgatcaaaa-taaaagcatatattttcaaaacataatttctatat |
117 |
Q |
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||||||||||| |||| ||||| ||| ||||||||||| || || ||||| ||||||| |||| ||||| | || ||||| || ||||||||||||| | |
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| T |
41760451 |
ggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataatt-acttgataaaaaataaaaacttacatttttaagacataatttctattt |
41760353 |
T |
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| Q |
118 |
ttaaattctttaa |
130 |
Q |
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| T |
41760352 |
ttagtttctttaa |
41760340 |
T |
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