View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17661_low_64 (Length: 215)
Name: NF17661_low_64
Description: NF17661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17661_low_64 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 6e-98; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 7704193 - 7704394
Alignment:
| Q |
1 |
tggagcatgttttgatttaagtgctattggtaggactattattggattggatgtgataaatattgatttggtcctaaaaaggggtgtgaagtggaca--- |
97 |
Q |
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| T |
7704193 |
tggagcatgttttgatttaagtgctattggtaggactattattggattggatgtgataaatattgatttggtcctaaaaaggggtgtgaagtggacagta |
7704292 |
T |
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| Q |
98 |
-gtatatggtggaaattcaatggtgttggtgaataaaaatgtagcatgtcttggatttgtggatggtggtaaagagccaagaagatcaattgttattggt |
196 |
Q |
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| T |
7704293 |
tgtatatggtggaaattcaatggtgttggtgaataaaaatgtagcatgtcttggatttgtggatggtggtaaagaaccaagaagatcaattgttattggt |
7704392 |
T |
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| Q |
197 |
gg |
198 |
Q |
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|| |
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| T |
7704393 |
gg |
7704394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 7699496 - 7699693
Alignment:
| Q |
1 |
tggagcatgttttgatttaagtgctattggtaggactattattggattggatgtgataaatattgatttggtcctaaaaaggggtgtgaagtggacagta |
100 |
Q |
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| T |
7699496 |
tggagcatgttttgattttagcaccattggtaggactaatactggattggatgtaccaactattgatttggttctacaaggtggtgtagagtggacaatt |
7699595 |
T |
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| Q |
101 |
tatggtggaaattcaatggtgttggtgaataaaaatgtagcatgtcttggatttgtggatggtggtaaagagccaagaagatcaattgttattggtgg |
198 |
Q |
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| T |
7699596 |
tacggtggaaattcaatggtgttggtgaataaaaaggtagcaagtcttggatttgtggatggtggtaaaaagccaacaacatcagttgttattggtgg |
7699693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 6 - 198
Target Start/End: Original strand, 7733834 - 7734026
Alignment:
| Q |
6 |
catgttttgatttaagtgctattggtaggactattattggattggatgtgataaatattgatttggtcctaaaaaggggtgtgaagtggacagtatatgg |
105 |
Q |
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| T |
7733834 |
catgttttgatttgagcactattggtaagactaatactggattggatgtgcctactattggtttggtgctagaaggaggtgtggagtggacaatttttgg |
7733933 |
T |
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| Q |
106 |
tggaaattcaatggtgttggtgaataaaaatgtagcatgtcttggatttgtggatggtggtaaagagccaagaagatcaattgttattggtgg |
198 |
Q |
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| T |
7733934 |
tggaaattctatggtcttggtgagtaaaaatgtagcatgtcttggatttgtggatggtggtaaagagccaagaacagctgttgttattggtgg |
7734026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 6 - 179
Target Start/End: Original strand, 7711524 - 7711697
Alignment:
| Q |
6 |
catgttttgatttaagtgctattggtaggactattattggattggatgtgataaatattgatttggtcctaaaaaggggtgtgaagtggacagtatatgg |
105 |
Q |
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| T |
7711524 |
catgttttgatttgagcactattggtaggtctaatgctggattggatgtgcctactattggtttggtgctagaaggaggtgtggagtggacaatttttgg |
7711623 |
T |
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| Q |
106 |
tggaaattcaatggtgttggtgaataaaaatgtagcatgtcttggatttgtggatggtggtaaagagccaagaa |
179 |
Q |
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| T |
7711624 |
tggaaattcaatggtgttggtgagtaaaaatgttgcatgtcttggatttgtggatggtggtaaagagccaagaa |
7711697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 6 - 179
Target Start/End: Complemental strand, 7746068 - 7745895
Alignment:
| Q |
6 |
catgttttgatttaagtgctattggtaggactattattggattggatgtgataaatattgatttggtcctaaaaaggggtgtgaagtggacagtatatgg |
105 |
Q |
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||||||||||||| ||| |||| ||||||||| || |||||||||||| | |||||||||||| ||| || ||||||||||||||||| | | ||| |
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| T |
7746068 |
catgttttgatttgagtactatgcgtaggactaatactggattggatgtacctactattgatttggtgctacaagggggtgtgaagtggacaatttttgg |
7745969 |
T |
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| Q |
106 |
tggaaattcaatggtgttggtgaataaaaatgtagcatgtcttggatttgtggatggtggtaaagagccaagaa |
179 |
Q |
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| T |
7745968 |
tggaaattctatggccttggtgagtaaaaatgtagcatgtcttggatttgtggatggtggtaatgagccaagaa |
7745895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 6 - 198
Target Start/End: Original strand, 7726412 - 7726604
Alignment:
| Q |
6 |
catgttttgatttaagtgctattggtaggactattattggattggatgtgataaatattgatttggtcctaaaaaggggtgtgaagtggacagtatatgg |
105 |
Q |
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| T |
7726412 |
catgttttgatttgagcactattggtaagactaatactggattggatgtgcctactattagtttggtgctagaaggtggtgtggagtggataattttcgg |
7726511 |
T |
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| Q |
106 |
tggaaattcaatggtgttggtgaataaaaatgtagcatgtcttggatttgtggatggtggtaaagagccaagaagatcaattgttattggtgg |
198 |
Q |
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| T |
7726512 |
tggaaattcaatggttttggtgaataaaaatgttgcatgtcttggatttgtggatggtggtaaagagccaagaacagctgttgttattggtgg |
7726604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 179
Target Start/End: Complemental strand, 7766814 - 7766766
Alignment:
| Q |
131 |
aaaaatgtagcatgtcttggatttgtggatggtggtaaagagccaagaa |
179 |
Q |
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| T |
7766814 |
aaaaatgtagcatgtcttggatttgttgatggagggacagagccaagaa |
7766766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 179
Target Start/End: Complemental strand, 7774147 - 7774093
Alignment:
| Q |
125 |
gtgaataaaaatgtagcatgtcttggatttgtggatggtggtaaagagccaagaa |
179 |
Q |
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| T |
7774147 |
gtgaagaaaaatgtagcatgtcttggaattgttgatggagggacagagccaagaa |
7774093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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