View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17661_low_66 (Length: 213)
Name: NF17661_low_66
Description: NF17661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17661_low_66 |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 16 - 196
Target Start/End: Original strand, 3019785 - 3019965
Alignment:
| Q |
16 |
ataggccacggcgacaaccacaatgagacatggtggtatcaaatgacaacactctcagaccttgtagaaacgctaacaactctcatatggatttctgcgg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3019785 |
ataggccacggcgacaaccacaatgagacatggtggtatcaaatgacaacactctcagaccttgtagaaacgctaacaactctcatatggatttctgcgg |
3019884 |
T |
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| Q |
116 |
cgcgtcatgcagttataaacgaccaaaaacatgcacaaaatggtaattaccctcctaattatcctacactatgtagaaagt |
196 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3019885 |
cgcgtcatgcagttataaaccaccaaaaacatgcacaaaatggtaattaccctcctaattatcctacactatgtagaaagt |
3019965 |
T |
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Target: chr6 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 16 - 196
Target Start/End: Original strand, 18363618 - 18363798
Alignment:
| Q |
16 |
ataggccacggcgacaaccacaatgagacatggtggtatcaaatgacaacactctcagaccttgtagaaacgctaacaactctcatatggatttctgcgg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18363618 |
ataggccacggcgacaaccacaatgagacatggtggtatcaaatgacaacactctcagaccttgtagaaacgctaacaactctcatatggatttctgcgg |
18363717 |
T |
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| Q |
116 |
cgcgtcatgcagttataaacgaccaaaaacatgcacaaaatggtaattaccctcctaattatcctacactatgtagaaagt |
196 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18363718 |
cgcgtcatgcagttataaaacaccaaaaacatgcacaaaatggtaattaccctcctaattatcctacactatgtagaaagt |
18363798 |
T |
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