View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17661_low_7 (Length: 522)
Name: NF17661_low_7
Description: NF17661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17661_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 11 - 508
Target Start/End: Complemental strand, 45703605 - 45703108
Alignment:
| Q |
11 |
caaaggtatttacccacttgatgaatgaaaattaacattttaaaatgtgtgagatgtatgcatatgagagataggtaaccaaagagtttttggtctgaag |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
45703605 |
caaaggtatttacccacttgatgaatgaaaattaacattttaaaatgtgtgagatgtatgcatatgagagataggtaaccaaagagtttcaggtctgaag |
45703506 |
T |
|
| Q |
111 |
ttgtgagtacatcaacgtaattgatcaatagaagtctgtcaacacaacttcaagagaactatgaatgtttggagtggaaaaccaacaaactgctataatt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45703505 |
ttgtgagtacatcaacgtaattgatcaatagaagtctgtcaacacaacttcaagagaactatgaatgtttggagtggaaaaccaacaaactgctataatt |
45703406 |
T |
|
| Q |
211 |
tcaaagttttcataactttggcgttcatgcatatcaagcaagaaaagattgatggtagggttgtaaaacgtgccttctttaatttggttatattgaacga |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
45703405 |
tcaaagttttcataactttggcgttcatgcatatcaagcaagaaaagattgatggtagggttgtaaaacgtgtcttctttaatttggttatattgaacga |
45703306 |
T |
|
| Q |
311 |
gcaagaattacaagttgctgataatggaaaaagagaaggatcaggatttattataagcataaatattatttttgatgagaccaatatgtggatgaagtgc |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45703305 |
gcaagaattacaagttgctgataatggaaaaagagaaggatcaggatttattataagcataaatattatttttgatgagaccaatatgtggatgaagtgc |
45703206 |
T |
|
| Q |
411 |
aaggacctattgaatattcactcagaaacaaagtagaagaaaacatagtttgagttggagccttccactagtgagacaagagacaaagaagagggtga |
508 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45703205 |
aaggacctactgaatattcactcagaaacaaagtagaagaaaacttagtttgagttggagccttccactagtgagacaagagacaaagaagagggtga |
45703108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 419
Target Start/End: Original strand, 15314749 - 15314821
Alignment:
| Q |
347 |
aggatcaggatttattataagcataaatattatttttgatgagaccaatatgtggatgaagtgcaaggaccta |
419 |
Q |
| |
|
||||||| |||||||||||||| || ||||||||||||||||| | ||| ||||||||||||| |||||| |
|
|
| T |
15314749 |
aggatcaaaatttattataagcagggatgttatttttgatgagacccacatggggatgaagtgcaaagaccta |
15314821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University