View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17661_low_8 (Length: 502)
Name: NF17661_low_8
Description: NF17661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17661_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 405; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 7 - 485
Target Start/End: Original strand, 35043647 - 35044110
Alignment:
| Q |
7 |
ggtagataattctatcatcttttatgcatgcttcaattatttttcaaaattattgggctggcccctgcatatgtgttttctctgccggcagatagtgctc |
106 |
Q |
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|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
35043647 |
ggtatataattctatcatcttttgtgcatgcttcaattatttttcaaaattattgggctggcccctgcatatgtgttttctctgctggcagatagtgctc |
35043746 |
T |
|
| Q |
107 |
ctccatcccttttatatacgttcaaatctacacctgcagagaaaccaacatcacacattacactacaccgctagctatagtactccatttctaacaccaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35043747 |
ctccatcccttttatatacgttcaaatctacacctgcagagaaaccaacatcacacattacactacaccgctagctatagtactccatttctaacaccaa |
35043846 |
T |
|
| Q |
207 |
gcaaatgatgaataatttgctttcaccttcgacccttcaaccatttactatttgcaccactttgttgtttcttttcgttctcttttggctactgagaagc |
306 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35043847 |
gcaaatgatgaataatttgctttcaccctcgacccttcaaccatttactatttgcaccactttgttgtttcttttcgttctcttttggctactgagaagc |
35043946 |
T |
|
| Q |
307 |
cgccgcattaatactagtgtagcttcaaagacaccaccaccagaagccagtggagcttggcctttgatcggccacctccacctcttaggtggatccgagc |
406 |
Q |
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|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
35043947 |
cgccgcattaatactagtgtagct---------------ccagaagccggtggagcttggcctttgatcggccacctccacctcttaggtggatcccagc |
35044031 |
T |
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| Q |
407 |
cacctcatgtcaccttagggaagctagccgataaatacggacctatcttcacctttcgttttggtgttcacaaaacact |
485 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35044032 |
cacctcatgtcaccttagggaagctagccgataaatacggacctatcttcacctttcgttttggtgttcacaaaacact |
35044110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 326 - 482
Target Start/End: Original strand, 35019594 - 35019747
Alignment:
| Q |
326 |
tagcttcaaagacaccaccaccagaagccagtggagcttggcctttgatcggccacctccacctcttaggtggatccgagccacctcatgtcaccttagg |
425 |
Q |
| |
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||||||||||||||||||| |||||| | ||| | ||||| || |||||||||||||||||||||||||| ||| | |||||||| ||||||||||| |
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| T |
35019594 |
tagcttcaaagacaccaccg---gaagccggcggatcatggccgttaatcggccacctccacctcttaggtggttcccaaccacctcacgtcaccttagg |
35019690 |
T |
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| Q |
426 |
gaagctagccgataaatacggacctatcttcacctttcgttttggtgttcacaaaac |
482 |
Q |
| |
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|| ||||||| ||||||||||| ||||||||| ||||||| |||||||||||||| |
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| T |
35019691 |
aaacttagccgacaaatacggacccatcttcaccgttcgtttaggtgttcacaaaac |
35019747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 328 - 482
Target Start/End: Original strand, 35029678 - 35029839
Alignment:
| Q |
328 |
gcttcaaagacaccaccacc------agaagccagtggagcttggcctttgatcggccacctccacctcttaggtggatccgagccacctcatgtcacct |
421 |
Q |
| |
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|||||||||||||||||||| ||||||||| ||||| ||||| || || ||||||||||||||||||||||| ||| | |||||||| || |||| |
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| T |
35029678 |
gcttcaaagacaccaccaccgccgccagaagccagcggagcatggccgttaattggccacctccacctcttaggtgggtcccaaccacctcacgttacct |
35029777 |
T |
|
| Q |
422 |
tagggaagctagccgataaatacggacctat-cttcacctttcgttttggtgttcacaaaac |
482 |
Q |
| |
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|||| || ||||||| ||||||||||| || ||||||| ||||||| |||||||||||||| |
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|
| T |
35029778 |
taggaaacttagccgacaaatacggacccatccttcaccgttcgtttaggtgttcacaaaac |
35029839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 327 - 476
Target Start/End: Original strand, 35035791 - 35035940
Alignment:
| Q |
327 |
agcttcaaagacaccaccaccagaagccagtggagcttggcctttgatcggccacctccacctcttaggtggatccgagccacctcatgtcaccttaggg |
426 |
Q |
| |
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|||||||| |||||||||||| ||||| ||| ||||||||||| |||||||||||||||||||||||||| ||| | | |||| || ||||||| || |
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| T |
35035791 |
agcttcaatgacaccaccacccgaagctgctggcgcttggcctttaatcggccacctccacctcttaggtggttcccaacaaccttatatcaccttggga |
35035890 |
T |
|
| Q |
427 |
aagctagccgataaatacggacctatcttcacctttcgttttggtgttca |
476 |
Q |
| |
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|| ||||||| ||||||||| | |||||||| | ||||| |||||||| |
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| T |
35035891 |
aacttagccgacaaatacggagccatcttcacagtgcgtttaggtgttca |
35035940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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