View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17662_high_11 (Length: 280)
Name: NF17662_high_11
Description: NF17662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17662_high_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 20 - 271
Target Start/End: Complemental strand, 9289277 - 9289026
Alignment:
| Q |
20 |
ggttcagaggtatctattgcctggcatgttccctgttgagatgcgagaacaggtaaagaatggatttttgaaggatgagatccagatcttgtgggatata |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9289277 |
ggttcagaggtatctattgcctggcatgttccctgtcgagatgcgagaacaggtaaagaatggatttttgaaggatgagatccagatcttgtgggatata |
9289178 |
T |
|
| Q |
120 |
tatgatcaaaagacagacaacaatatcaattattatgatttatattcagtagaacaaaataatggattagttgtttgtgtatgcacgagtggcacgtaat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9289177 |
tatgatcaaaagacagacaacaatatcaattattatgatttatattcagtagaacaaaataatggattagttgtttgtgtatgcacgagtggcacgtaat |
9289078 |
T |
|
| Q |
220 |
cggagaagcaacaagcagaaccaattttaataatttaattgatgagtataat |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
9289077 |
cggagaagcaacaagcagaaccaattttaataatttaattgatgagtgtaat |
9289026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 20 - 243
Target Start/End: Complemental strand, 9293783 - 9293563
Alignment:
| Q |
20 |
ggttcagaggtatctattgcctggcatgttccctgttgagatgcgagaacaggtaaagaatggatttttgaaggatgagatccagatcttgtgggatata |
119 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||| ||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
9293783 |
ggttcagaggtatcaattggctggcatgttccctgttgaggtgctagaactggtaaagaatggattttagaaggatgagatccagatcttgtggg----a |
9293688 |
T |
|
| Q |
120 |
tatgatcaaaagacagacaacaatatcaattattatgatttata-ttcagtagaacaaaataatggattagttgtttgtgtatgcacgagtggcacgtaa |
218 |
Q |
| |
|
| |||||||||||||||||||||||| ||||||||||||||| | || |||| |||||||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
9293687 |
tttgatcaaaagacagacaacaatataaattattatgatttacattttagtataacaaaataatggattcgttggttgtgtatgcacgagtggcacgtaa |
9293588 |
T |
|
| Q |
219 |
tcggagaagcaacaagcagaaccaa |
243 |
Q |
| |
|
||||||||||||||||||| ||||| |
|
|
| T |
9293587 |
tcggagaagcaacaagcagcaccaa |
9293563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 73 - 264
Target Start/End: Complemental strand, 9298364 - 9298161
Alignment:
| Q |
73 |
taaagaatggatttttgaaggatgagatccagatcttgtgggatatatatgatcaaaagacagacaacaatatcaattat----------------tatg |
156 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
9298364 |
taaagaatgaatttttgaaggatgagatccagatcttgagggatat----gatcaaaagacagacaacaatatcaattatgtaacaaaaaaactattatg |
9298269 |
T |
|
| Q |
157 |
atttatattcagtagaacaaaataatggattagttgtttgtgtatgcacgagtggcacgtaatcggagaagcaacaagcagaaccaattttaataattta |
256 |
Q |
| |
|
||| | ||| |||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
9298268 |
attaacatttagtaaaacaaaataatggattagtaggttgtgtatgtacgagtggcacgtaatcggagaagcaacaagcagcaccaattttcataattta |
9298169 |
T |
|
| Q |
257 |
attgatga |
264 |
Q |
| |
|
|||||||| |
|
|
| T |
9298168 |
attgatga |
9298161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 73 - 152
Target Start/End: Original strand, 9372803 - 9372881
Alignment:
| Q |
73 |
taaagaatggatttttgaaggatgagatccagatcttgtgggatatatatgatcaaaagacagacaacaatatcaattat |
152 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
9372803 |
taaagaatggatttcagaaggatgagatccagatcttgtgggatatatatgatc-aaacacagacaacaatatcaattat |
9372881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 73 - 152
Target Start/End: Original strand, 9366889 - 9366967
Alignment:
| Q |
73 |
taaagaatggatttttgaaggatgagatccagatcttgtgggatatatatgatcaaaagacagacaacaatatcaattat |
152 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| ||||||| |||| ||||| ||||||| ||||||||||||| |
|
|
| T |
9366889 |
taaagaatggatttcagaaggatgagatccagatcttgttggatatacatgaccaaaa-acagacagcaatatcaattat |
9366967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 73 - 152
Target Start/End: Original strand, 9309215 - 9309290
Alignment:
| Q |
73 |
taaagaatggatttttgaaggatgagatccagatcttgtgggatatatatgatcaaaagacagacaacaatatcaattat |
152 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
9309215 |
taaagaatggatttcagaaggatgagatccagatcttgaggg----atatgatcaaaagacagacaacaatatcagttat |
9309290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 73 - 152
Target Start/End: Original strand, 9348255 - 9348330
Alignment:
| Q |
73 |
taaagaatggatttttgaaggatgagatccagatcttgtgggatatatatgatcaaaagacagacaacaatatcaattat |
152 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||| |
|
|
| T |
9348255 |
taaagaatggatttcagaaggatgagatccagatcttgagg----tatatgatcaaaagacagacaacaatatcagttat |
9348330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 152
Target Start/End: Original strand, 9355736 - 9355811
Alignment:
| Q |
73 |
taaagaatggatttttgaaggatgagatccagatcttgtgggatatatatgatcaaaagacagacaacaatatcaattat |
152 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| |||||||||||| | ||||||||| |||||||| |
|
|
| T |
9355736 |
taaagaatggattttagaaggatgagatccagatcttgtggg----atatgatcaaaatatggacaacaatgtcaattat |
9355811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University