View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17662_high_15 (Length: 249)
Name: NF17662_high_15
Description: NF17662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17662_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 2471427 - 2471196
Alignment:
| Q |
1 |
agttgtaaatacattccttcttttatgcattcatactgaatgaattttgataatgaagctagcttctatttaatctattattattaataacatagtggct |
100 |
Q |
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| T |
2471427 |
agttgtaaatacattccttcttttatgcattcatactgaatgaattttgataatgaagctagcttctatttaatctattattattaataacatagtggct |
2471328 |
T |
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| Q |
101 |
taaagcctctaactatatacaagaatattgtattataaatgaaaggtgtatggctgctgaaagaacttctgttgacatcaatattgtttgttatggtttc |
200 |
Q |
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| T |
2471327 |
taaagcctctaactatatacaagaatattgtattataaatgaaaggtgtatggctgctgaaagaacttctgttgacatcaatattgtttgttatggtttc |
2471228 |
T |
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| Q |
201 |
tttatcaatattcattcaataactttcactat |
232 |
Q |
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| T |
2471227 |
tttatcaatattcattcaataactttcactat |
2471196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 2459920 - 2459847
Alignment:
| Q |
1 |
agttgtaaatacattccttcttttatgcattcatactgaatgaattttgataatgaagctagcttctatttaat |
74 |
Q |
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| T |
2459920 |
agttataaatacattccttcttttatgccttcatactgaatgaattttggtaatgaagctagcttctctttaat |
2459847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 152
Target Start/End: Complemental strand, 2459837 - 2459802
Alignment:
| Q |
117 |
atacaagaatattgtattataaatgaaaggtgtatg |
152 |
Q |
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| T |
2459837 |
atacaagaatattgtattataaatgaaaggtgtatg |
2459802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 178
Target Start/End: Complemental strand, 2476787 - 2476742
Alignment:
| Q |
133 |
ttataaatgaaaggtgtatggctgctgaaagaacttctgttgacat |
178 |
Q |
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| T |
2476787 |
ttataaatcaaagttgtatgactcctgaaagaacttctgttgacat |
2476742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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