View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17662_high_21 (Length: 227)
Name: NF17662_high_21
Description: NF17662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17662_high_21 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 5 - 227
Target Start/End: Original strand, 35644572 - 35644794
Alignment:
| Q |
5 |
caattccttgtgactcggcaaatgcatcaatcatctcaaaacctacctgatacaaacgaaaacattttcaatcaaatttcatcatcaaatgccnnnnnnn |
104 |
Q |
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| T |
35644572 |
caattccttgtgactcggcaaatgcatcaatcatctcaaaacctacctgatacaaacgaaaacattttcaatcaaatttcatcatcaaataccaaaaaaa |
35644671 |
T |
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| Q |
105 |
gcccctccgtgatcgaaaactaactaactaactcgtacattgtgtcgagttcctttgtatttgtcgccggggttacccaatccaacgaaaagccaagggc |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35644672 |
gcccctccgtgatcgaaaactaactaactaactcgtacattgtgtcgagttcctttgtatttgtcgccggggttacccaatccaacgaaaagccaagggc |
35644771 |
T |
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| Q |
205 |
gaggagcgacggtgcaaaagctc |
227 |
Q |
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||||||||||||||||||||||| |
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| T |
35644772 |
gaggagcgacggtgcaaaagctc |
35644794 |
T |
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