View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17662_low_1 (Length: 718)
Name: NF17662_low_1
Description: NF17662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17662_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 454; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 15 - 507
Target Start/End: Original strand, 39150474 - 39150964
Alignment:
| Q |
15 |
ataggatgggaaaagtaattgtcatacgtcctaatattcaattatatttcgacagacccaatgatcatgaattcatgattagggaacattaatcctcaac |
114 |
Q |
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| T |
39150474 |
ataggatggaaaaagtaattgtatt--gtcctaatattcaattatatttcgacagacccaatgatcatgaattcatgattagggaacattaatcctcgac |
39150571 |
T |
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| Q |
115 |
gttatctcttttacgtcgttcttctatggacattgttatcaaactaccaagtaacgacgccaagtaaaacataagctagagcttctcctagaaaaacaaa |
214 |
Q |
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| T |
39150572 |
gttatctcttttacgtcgttcttctatggacattgttatcaaactaccaagtaacgacgccaagtaaaacataagctagagcttctcctagaaaaacaaa |
39150671 |
T |
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| Q |
215 |
agagcataacttgaagaaccttgttcaaactgcaatgtcttgtgttgtgacacaaaatagcaagagtacacgattagcattagagaggttgaaattgaga |
314 |
Q |
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| T |
39150672 |
agagcataacttgaagaaccttgttcaaactgcaatgtcttgtgttgtgacacaaaatagcaagagtacacgattagcattagagagattgaaattgaga |
39150771 |
T |
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| Q |
315 |
gagtcgagctaatctttgcaaaatccaaatttagtatgataagaaaacttaaggctatgtctaagctctcacgtgtcataaatttatttttaagcatgat |
414 |
Q |
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| T |
39150772 |
gagtcgagctaatctttgcaaaatccaaatttagtatgataagaaaacttaaggctatgtctaagctctcacgtgtcataaatttatttttaagcatgat |
39150871 |
T |
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| Q |
415 |
ccaaaacaaaaaacgaagcttgatcctaacctttttgaaaatttggtacaattttgacctttttagttaaataaattcataaaaatgccttag |
507 |
Q |
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| T |
39150872 |
ccaaaacaaaaaacgaagcttgatcctaacctttttaaaaatttggtacaattttgacctttttagttaaataaattcataaaaaagccttag |
39150964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 540 - 702
Target Start/End: Original strand, 39151388 - 39151551
Alignment:
| Q |
540 |
agattcttacccagataaaaatgtgagtattgagtaacatataagttcgaagaattatatacttgatactttaagttttttagtgaagatgtgatgttta |
639 |
Q |
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| T |
39151388 |
agatttttacccagatgaaaaagtgagtattgagtgacatataagttcgaagaattatatacttgatactttaagttttttagtgaagatgtgatgttta |
39151487 |
T |
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| Q |
640 |
taacacttgcg-ttttgctcttagccaatgtaatgcttcccgtgtcggctcacaattagtttat |
702 |
Q |
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| T |
39151488 |
taacacttgcgtttttgctcttagccaatgtaatgcttcccgtgtcggctcacaattagtttat |
39151551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 502 - 536
Target Start/End: Original strand, 39151334 - 39151368
Alignment:
| Q |
502 |
ccttagacttctttatttaagaaaaagtccggtga |
536 |
Q |
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| T |
39151334 |
ccttagacttctttatttaagaaaaagtccggtga |
39151368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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