View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17662_low_12 (Length: 312)
Name: NF17662_low_12
Description: NF17662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17662_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 13 - 298
Target Start/End: Complemental strand, 3172909 - 3172624
Alignment:
| Q |
13 |
aaaataattgtaggtagtccaatgcatgtaatgttgaaaagtgatgatattggtttgttaaagtctggtggatgcaatcaggatgcgaactttgattttg |
112 |
Q |
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| T |
3172909 |
aaaacaattgtaggtagtccaatgcgtgtaatgttgaaaagtgatgatattggtttgttaaagtc-ggtggatgcaatcaggatgcgaactttgattttg |
3172811 |
T |
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| Q |
113 |
ttttccaata-ttgggagacttggaatgagaaggaattgtcttttatttcaaaattcaaatacttacgcgtcttgaagttgtcttgttctttaagtaagt |
211 |
Q |
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| T |
3172810 |
ttttccaataattgggagacttggaatgaaaaggaattgtcttttatttcaaaattcaaatacttacgcgtcttgaagttgtcttgttctttaagtaagt |
3172711 |
T |
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| Q |
212 |
cgttctgtgattcaattggaaaattgaggcatttaagatatcttaacttatggtactgtgaaggagggagaagtcttttgaaatctg |
298 |
Q |
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| T |
3172710 |
cgttctgtgattcaattggaaaattgaggcatttaagatatcttaatttatggtactgcgaaggagggagaagtcttttgaaatctg |
3172624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 28 - 269
Target Start/End: Complemental strand, 3169322 - 3169081
Alignment:
| Q |
28 |
agtccaatgcatgtaatgttgaaaagtgatgatattggtttgttaaagtctggtggatgcaatcaggatgcgaactttgattttgttttccaatattggg |
127 |
Q |
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| T |
3169322 |
agtcccatgcatataatgatgaaaatggatgatattggtttgttagagtc-ggtggatgcaagcaggctgcgtactttgattttgatgcccaaccttaag |
3169224 |
T |
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| Q |
128 |
agactt-ggaatgagaaggaattgtcttttatttcaaaattcaaatacttacgcgtcttgaagttgtc---ttgttctttaagtaagtcgttctgtgatt |
223 |
Q |
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| T |
3169223 |
acgtttaggaatgaggaagacatgtctattatttcaaaattcaaatatttacgcgtcttgaagctatcacattgttctttatgtaagttgt---gtgatt |
3169127 |
T |
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| Q |
224 |
caattggaaaattgaggcatttaagatatcttaacttatggtactg |
269 |
Q |
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| T |
3169126 |
caattgtaaaattgaagcatttaagatatcttgacttatggtactg |
3169081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 261
Target Start/End: Complemental strand, 3141107 - 3141003
Alignment:
| Q |
157 |
atttcaaaattcaaatacttacgcgtcttgaag---ttgtcttgttctttaagtaagtcgttctgtgattcaattggaaaattgaggcatttaagatatc |
253 |
Q |
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| T |
3141107 |
atttcaaaattcaaatacttacgcgtcttgaagcttatgcgttgttctctaagtaa---tttgtgtgattcaattgaaaagttgaaccatttgagatatc |
3141011 |
T |
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| Q |
254 |
ttaactta |
261 |
Q |
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|||||||| |
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| T |
3141010 |
ttaactta |
3141003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 262
Target Start/End: Complemental strand, 3281432 - 3281325
Alignment:
| Q |
155 |
ttatttcaaaattcaaatacttacgcgtcttgaagttgtc---ttgttctttaagtaagtcgttctgtgattcaattggaaaattgaggcatttaagata |
251 |
Q |
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|||||||||||||||||| ||||| || |||| | |||| |||||||||||| |||| || | |||||||||||||||||| ||||||||||| |
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| T |
3281432 |
ttatttcaaaattcaaatgtttacgtgttttgatgctgtcatattgttctttaagcaagttgtc---taattcaattggaaaattgaaacatttaagata |
3281336 |
T |
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| Q |
252 |
tcttaacttat |
262 |
Q |
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| T |
3281335 |
tcttaacttat |
3281325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 262
Target Start/End: Original strand, 13792529 - 13792569
Alignment:
| Q |
222 |
ttcaattggaaaattgaggcatttaagatatcttaacttat |
262 |
Q |
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| T |
13792529 |
ttcaattggaaaattgaaacatttaaggtatcttaacttat |
13792569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 264
Target Start/End: Original strand, 7160494 - 7160738
Alignment:
| Q |
20 |
ttgtaggtagtccaatgcatgtaatgttgaaaagtgatgatattggtttgttaaagtctggtggatgcaatcaggatgcgaactttgattttgttttcca |
119 |
Q |
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| T |
7160494 |
ttgtaggaagtcccgtgcatgtaatggtgaaaagtgatgctattggtttgttagaatcat-tggatgcaagcaagttgcgaactttaattttgcttacca |
7160592 |
T |
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| Q |
120 |
atattgg-gagacttggaatgagaaggaattgtcttttatttcaaaattcaaatacttacgcgtcttgaagttgtc---ttgttctttaagtaagtcgtt |
215 |
Q |
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| ||| |||| |||||| ||||||||| | ||| |||||| |||||||||||||||||||||||| || | || ||||||||||||||| | | |
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| T |
7160593 |
acatttcagagaattggaacgagaaggaagtatctgttattttaaaattcaaatacttacgcgtcttatagatatcatgttgttctttaagtaa---ggt |
7160689 |
T |
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| Q |
216 |
ctgtgattcaattggaaaattgaggcatttaagatatcttaacttatgg |
264 |
Q |
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| T |
7160690 |
gtgtgaatcaatcggaaaattgaagcatttaagatatcttaacttatgg |
7160738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 35 - 273
Target Start/End: Complemental strand, 3918221 - 3917983
Alignment:
| Q |
35 |
tgcatgtaatgttgaaaagtgatgatattggtttgttaaagtctggtggatgcaatcaggatgcgaactttgattttgttttccaata-ttgggagactt |
133 |
Q |
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| T |
3918221 |
tgcatgtaatgttgcaaagtgaagctattggtttgttggagtcat-tgaatgcaagaaagatgcgaactttgattttgttgtccaacaattcagagagta |
3918123 |
T |
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| Q |
134 |
ggaatgagaaggaattgtcttttatttcaaaattcaaatacttacgcgtcttgaagttgtc---ttgttctttaagtaagtcgttctgtgattcaattgg |
230 |
Q |
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||||||||||||||||| | |||| |||||||||||||||||||| || |||||| | || ||||||||| ||| | ||| ||| |||| || |
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| T |
3918122 |
tgaatgagaaggaattgtttgttatatcaaaattcaaatacttacgtgtattgaagctttcacattgttctttgagtga---gttgtgtacttcatttat |
3918026 |
T |
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| Q |
231 |
aaaattgaggcatttaagatatcttaacttatggtactgtgaa |
273 |
Q |
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|||||||| ||||||||||||||||| |||||| |||||||| |
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| T |
3918025 |
aaaattgaagcatttaagatatcttagcttatgtgactgtgaa |
3917983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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