View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17662_low_14 (Length: 272)
Name: NF17662_low_14
Description: NF17662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17662_low_14 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: scaffold0013 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 19 - 262
Target Start/End: Complemental strand, 92807 - 92566
Alignment:
| Q |
19 |
ttacttgtacggaaagaggtttgtcggtccaatcacaccactcatcttacagttgagagaagaacttcatactcaaccttatggtaaagttaactggaaa |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
92807 |
ttacttgtacggaaagaggtttgtcggtccaatcacaccactcgtcttacagttgagagaagaacttcatactcaaccttatggtaaagttaactggaaa |
92708 |
T |
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| Q |
119 |
aaagcacgccacctatgtgcaaaggtgagactctttgtctctaattcatgacagtgtatatgaatttacacatctctttaacgtatgagggataatggtc |
218 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |
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| T |
92707 |
aaagcacgccacctatgtgcaaaggtgaggctctttgtctctaattcatgacagtg--tatgaatttacacatctctttaacgtatgagggataatgttc |
92610 |
T |
|
| Q |
219 |
cattttatgctcaacaggaagatatctactatcctcatcctttg |
262 |
Q |
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| T |
92609 |
cattttatgctcaacaggaagatatctactatcctcatcctttg |
92566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 9e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 19 - 262
Target Start/End: Original strand, 164460 - 164702
Alignment:
| Q |
19 |
ttacttgtacggaaagaggtttgtcggtccaatcacaccactcatcttacagttgagagaagaacttcatactcaaccttatggtaaagttaactggaaa |
118 |
Q |
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|||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||| ||| |||| |
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| T |
164460 |
ttacttgtacgggaagaggtttgtaggtcctatcacaccactcatcttacagttgagagaagaactccatacccaaccttatgaaaaaactaattggacg |
164559 |
T |
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| Q |
119 |
aaagcacgccacctatgtgcaaaggtgagactctttgtctctaattcatgacagtgtatatgaatttacacat-ctctttaacgtatgagggataatggt |
217 |
Q |
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| T |
164560 |
aaatcacgtcacctatgtgcaaaggttagagtctttatctttaattgatcacaatg--tgtgaaattacacatcctttttaacataggagggataatgat |
164657 |
T |
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| Q |
218 |
ccattttatg-ctcaacaggaagatatctactatcctcatcctttg |
262 |
Q |
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| T |
164658 |
ccattttatgtctc-ataggaagatctttactatccccatcctttg |
164702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 103494 - 103639
Alignment:
| Q |
19 |
ttacttgtacggaaagaggtttgtcggtccaatcacaccactcatcttacagttgagagaagaacttcatactcaaccttatggtaaagttaactggaaa |
118 |
Q |
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|||||||||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||| ||||||||| |
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| T |
103494 |
ttacttgtacgggaagagatttgtgggtccgatcacaccactcatcttacagttgagagaagaactccatactcagccttatgaaaaaattaactggacg |
103593 |
T |
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| Q |
119 |
aaagcacgccacctatgtgcaaaggtgagactctttgtctctaatt |
164 |
Q |
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| T |
103594 |
aaatcacgtcacctatgtgcaaaggtgagagtcattgtctttaatt |
103639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 147
Target Start/End: Complemental strand, 5722599 - 5722471
Alignment:
| Q |
19 |
ttacttgtacggaaagaggtttgtcggtccaatcacaccactcatcttacagttgagagaagaacttcatactcaaccttatggtaaagttaactggaaa |
118 |
Q |
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||||||||| |||||||||||||||||||||||||||||| | |||||| |||||||||||||||| | ||| ||||||||| |||||||| ||| || |
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| T |
5722599 |
ttacttgtatggaaagaggtttgtcggtccaatcacaccattgatcttaaagttgagagaagaactccttacagaaccttatgaaaaagttaattggcaa |
5722500 |
T |
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| Q |
119 |
aaagcacgccacctatgtgcaaaggtgag |
147 |
Q |
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|||| ||| |||||||||||||||||||| |
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| T |
5722499 |
aaagtacgtcacctatgtgcaaaggtgag |
5722471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 19 - 147
Target Start/End: Complemental strand, 5670485 - 5670357
Alignment:
| Q |
19 |
ttacttgtacggaaagaggtttgtcggtccaatcacaccactcatcttacagttgagagaagaacttcatactcaaccttatggtaaagttaactggaaa |
118 |
Q |
| |
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||||||||| || |||||||||||||||||||| ||||||||||||||| |||||||||||||||| | ||| ||| ||||| |||||||| ||| || |
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| T |
5670485 |
ttacttgtatgggaagaggtttgtcggtccaataacaccactcatcttaaagttgagagaagaactccttacagaacattatgaaaaagttaattggcaa |
5670386 |
T |
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| Q |
119 |
aaagcacgccacctatgtgcaaaggtgag |
147 |
Q |
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|||| |||||| ||||||||||||||||| |
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| T |
5670385 |
aaagtacgccatctatgtgcaaaggtgag |
5670357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 19 - 147
Target Start/End: Complemental strand, 5692259 - 5692131
Alignment:
| Q |
19 |
ttacttgtacggaaagaggtttgtcggtccaatcacaccactcatcttacagttgagagaagaacttcatactcaaccttatggtaaagttaactggaaa |
118 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| | | |||| |||||||||||||||| | ||| ||||||||| |||||||| ||| || |
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| T |
5692259 |
ttacttgtatggaaagaggtttgtcggtccaatcacaccattgaccttaaagttgagagaagaactccttacagaaccttatgaaaaagttaattggcaa |
5692160 |
T |
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| Q |
119 |
aaagcacgccacctatgtgcaaaggtgag |
147 |
Q |
| |
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|||| |||||| ||||||||||||||||| |
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| T |
5692159 |
aaagtacgccatctatgtgcaaaggtgag |
5692131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 19 - 145
Target Start/End: Complemental strand, 12137803 - 12137677
Alignment:
| Q |
19 |
ttacttgtacggaaagaggtttgtcggtccaatcacaccactcatcttacagttgagagaagaacttcatactcaaccttatggtaaagttaactggaaa |
118 |
Q |
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|
||||||||| |||||||| ||||| ||| |||||||||| |||||||||||||||||||||||||| ||||| ||||||||| |||||||| |||||| |
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| T |
12137803 |
ttacttgtatggaaagagatttgtgggttcaatcacaccgctcatcttacagttgagagaagaactctatactgaaccttatgcaaaagttaattggaaa |
12137704 |
T |
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| Q |
119 |
aaagcacgccacctatgtgcaaaggtg |
145 |
Q |
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|||||||| |||| ||||| |||||| |
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| T |
12137703 |
aaagcacgtcaccagtgtgcgaaggtg |
12137677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 148
Target Start/End: Original strand, 13052419 - 13052548
Alignment:
| Q |
19 |
ttacttgtacggaaagaggtttgtcggtccaatcacaccactcatcttacagttgagagaagaacttcatactcaaccttatggtaaagttaactggaaa |
118 |
Q |
| |
|
|||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||| ||||||||| | |||||| | ||| |
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| T |
13052419 |
ttacttgtacgggaagaggtttgtgggtcgaatcacaccactcatcttacagttgagagaagaaattcataatcaaccttacgaaaaagttgattggttc |
13052518 |
T |
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| Q |
119 |
aaagcacgccacctatgtgcaaaggtgaga |
148 |
Q |
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||| |||| |||| |||||||||||||||| |
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| T |
13052519 |
aaatcacgtcaccaatgtgcaaaggtgaga |
13052548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 1942033 - 1941994
Alignment:
| Q |
19 |
ttacttgtacggaaagaggtttgtcggtccaatcacacca |
58 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||| |
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| T |
1942033 |
ttacttgtacggaaagaggtttgttggtccaatcacacca |
1941994 |
T |
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