View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17662_low_2 (Length: 654)

Name: NF17662_low_2
Description: NF17662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17662_low_2
NF17662_low_2
[»] chr1 (1 HSPs)
chr1 (15-647)||(2466796-2467427)


Alignment Details
Target: chr1 (Bit Score: 588; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 15 - 647
Target Start/End: Complemental strand, 2467427 - 2466796
Alignment:
Q  15 atttgcatgtccaacctaacaagacctacaaattgcaaccaccaagaatgtatcaatcaacattatcatnnnnnnncacaaacaattttttcagcttatg 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||| |||    
T  2467427 atttgcatgtccaacctaacaagacctacaaattgcaaccaccaagaatgtatcaatcaacattatcataaaaaaacacaaacaattttttcagct-atg 2467329  T
Q  115 tataaaataacctctaagtcataattcagatacagaaactcaccaccttgtaccacttcagttttgtgcaagcaacaaaaataaaatgtccttaattgca 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2467328 tataaaataacctctaagtcataattcagatacagaaactcaccacctagtaccacttcagttttgtgcaagcaacaaaaataaaatgtccttaattgca 2467229  T
Q  215 gaagcaccagaatttcttcaagttttctcagatggaacggtgagacgtttcaacccagaaatagcaccaccctcattagattcatccaacaaatacaaat 314  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2467228 gaagcaccagaatttcttcaagttttctcagatggaacggtgaaacgtttcaacccagaaatagcaccaccctcattagattcatccaacaaatacaaat 2467129  T
Q  315 ccaaagacgtaatcattgaccctacaaaacccatcacaggaagaatcttcattccaaacaatccaaccaaaaaactcctacctctcttagtttatttcca 414  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2467128 ccaaagacataatcattgaccctacaaaacccatcacaggaagaatcttcattccaaacaatccaaccaaaaaactcctacctctcttagtttatttcca 2467029  T
Q  415 tggtggtggcttttgcattggttccacaacatggcttggttacaacaacttcctcggagatttctccgtcgcgtcacagtccattattctctctgttgat 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2467028 tggtggtggcttttgcattggttccacaacatggcttggttacaacaacttcctcggagatttctccgtcgcgtcacagtccattattctctctgttgat 2466929  T
Q  515 taccggttagcaccggagcatcgtcttccaatagcttatgaagattgttactcatcacttgaatggcttggtgaaaatgtgaaaaccgaaccgtttctac 614  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2466928 taccggttagcaccggagaatcgtcttccaatagcttatgaagattgttactcatcacttgaatggcttggtgaaaatgtgaaaaccgaaccgtttctac 2466829  T
Q  615 gacatgctgatttatcaaatgtttttctctctg 647  Q
    |||||||||||||||||||||||||||||||||    
T  2466828 gacatgctgatttatcaaatgtttttctctctg 2466796  T

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