View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17662_low_3 (Length: 514)

Name: NF17662_low_3
Description: NF17662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17662_low_3
NF17662_low_3
[»] chr4 (24 HSPs)
chr4 (1-496)||(2471456-2471951)
chr4 (95-415)||(2460097-2460420)
chr4 (274-413)||(2547217-2547356)
chr4 (278-338)||(2533990-2534050)
chr4 (278-412)||(2518910-2519044)
chr4 (119-225)||(2621584-2621690)
chr4 (280-336)||(5035301-5035357)
chr4 (118-225)||(2467041-2467148)
chr4 (273-368)||(2475952-2476047)
chr4 (118-225)||(2477094-2477201)
chr4 (278-417)||(2621395-2621534)
chr4 (278-332)||(5106631-5106685)
chr4 (274-331)||(2546817-2546874)
chr4 (279-331)||(2367981-2368033)
chr4 (173-225)||(2475853-2475905)
chr4 (278-337)||(2467219-2467278)
chr4 (101-216)||(5102510-5102625)
chr4 (186-225)||(5106726-5106765)
chr4 (278-336)||(2490805-2490863)
chr4 (172-225)||(2382931-2382984)
chr4 (172-212)||(2368103-2368143)
chr4 (347-415)||(2482526-2482594)
chr4 (271-319)||(2625589-2625637)
chr4 (172-212)||(12126466-12126506)


Alignment Details
Target: chr4 (Bit Score: 468; Significance: 0; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 1 - 496
Target Start/End: Original strand, 2471456 - 2471951
Alignment:
Q  1 caacaaataataaagaaaaactgaaatgtggaaaattgagaatgcaaattataattcaactagaaatccatcaaaactgccctcgtccatgaatgatagg 100  Q
    |||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  2471456 caacaaataatagagaaaaactgaaatttggaaaattgagaattcaaattataattcaactagaaatccatcaaaactgccctcgtccatgaatgatagt 2471555  T
Q  101 caatcactttgacctgctgaagaaggttacaattcttgcagagatcgataatagattggcgaaccatcaatttaccatataaataaatcttgcggagttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2471556 caatcactttgacctgctgaagaaggttacaattcttgcagagatcgataatagattggcgaaccatcaatttaccatataaataaatcttgcggagttt 2471655  T
Q  201 gggaagttccaacaattgatcatcaaaatcatccttccttgtaatctcgggataatggaggccagattctgtgagggtgagttcttcgagtaaaggaaaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2471656 gggaagttccaacaattgatcatcaaaatcatccttccttgtaatctggggataatggaggccagattctgtgagggtgagttcttcgagtaaaggaaaa 2471755  T
Q  301 caatcagctatcaagaagagatgattcttgtcgatataattaactttggaacaatttagagatgtcaatttcttcatcttttcagacagagctcgcaatc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2471756 caatcagctatcaagaagagatgattcttgtcgatataattaactttggaacaatttagagatgtcaatttcttcatcttttcagacagagctcgcaatc 2471855  T
Q  401 catcttcaggaatattgaaggcacggtaggagagatggggcgatttgatgtatgaattagggaaagtggaaagacggagcgatttgatgtctgata 496  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2471856 catcttcaggaatattggaggcacggtaggagagatggagcgatttgatgtatgaattagggaaagtggaaagacggagcgatttgatgtctgata 2471951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 95 - 415
Target Start/End: Original strand, 2460097 - 2460420
Alignment:
Q  95 gataggcaatcactttgacctgctgaagaaggttacaattcttgcagagatcgataatagattggcgaaccatcaatttac---catataaataaatctt 191  Q
    ||||| |||||||||||||||  |||||||||| |||||||||||| ||||| |||||||||||| || |||||| ||||    ||||||||| ||||||    
T  2460097 gatagtcaatcactttgacctcttgaagaaggtcacaattcttgcaaagatcaataatagattggtgatccatcactttattatcatataaatgaatctt 2460196  T
Q  192 gcggagtttgggaagttccaacaattgatcatcaaaatcatccttccttgtaatctcgggataatggaggccagattctgtgagggtgagttcttcgagt 291  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||    ||||  | ||| | |||||||||||||| ||||||||||||||    
T  2460197 gcggagtttgggaagttccaacaattgatcttcaaaatcatccttccttgtaaagaggggactacggaagacagattctgtgaggatgagttcttcgagt 2460296  T
Q  292 aaaggaaaacaatcagctatcaagaagagatgattcttgtcgatataattaactttggaacaatttagagatgtcaatttcttcatcttttcagacagag 391  Q
    || |||||||||||||| || |||||||||||||||||||| ||||| ||||| || | |||||| ||| |||||||||| ||||||||||  ||||||     
T  2460297 aatggaaaacaatcagcaattaagaagagatgattcttgtccatatatttaacatttgtacaattgagaaatgtcaattttttcatctttttggacagaa 2460396  T
Q  392 ctcgcaatccatcttcaggaatat 415  Q
    |||||||||||||||||| |||||    
T  2460397 ctcgcaatccatcttcagaaatat 2460420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 274 - 413
Target Start/End: Original strand, 2547217 - 2547356
Alignment:
Q  274 agggtgagttcttcgagtaaaggaaaacaatcagctatcaagaagagatgattcttgtcgatataattaactttggaacaatttagagatgtcaatttct 373  Q
    |||||||||||||| |||||||| ||||||||||| || ||||| | || |||||||  |||| |  | | |||||||||| | ||||| ||||| || |    
T  2547217 agggtgagttcttcaagtaaagggaaacaatcagcaatgaagaataaatcattcttgctgataaaggtgattttggaacaaatgagagacgtcaaatttt 2547316  T
Q  374 tcatcttttcagacagagctcgcaatccatcttcaggaat 413  Q
    ||||||||||||||| ||||||||| |||| | |||||||    
T  2547317 tcatcttttcagacaaagctcgcaacccatttgcaggaat 2547356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 278 - 338
Target Start/End: Original strand, 2533990 - 2534050
Alignment:
Q  278 tgagttcttcgagtaaaggaaaacaatcagctatcaagaagagatgattcttgtcgatata 338  Q
    |||||||||| |||||||| ||||||||||| ||||||||||||| |||||||| ||||||    
T  2533990 tgagttcttcaagtaaagggaaacaatcagcaatcaagaagagatcattcttgttgatata 2534050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 278 - 412
Target Start/End: Original strand, 2518910 - 2519044
Alignment:
Q  278 tgagttcttcgagtaaaggaaaacaatcagctatcaagaagagatgattcttgtcgatataattaactttggaacaatttagagatgtcaatttcttcat 377  Q
    ||||||||| ||||||||| ||||||||||| || |||||||||| |||||||| |||||| || | ||   ||||| | ||| ||||||| || |||||    
T  2518910 tgagttctttgagtaaagggaaacaatcagcaatgaagaagagatcattcttgtggatatatttcatttaataacaagtgagatatgtcaaatttttcat 2519009  T
Q  378 cttttcagacagagctcgcaatccatcttcaggaa 412  Q
     |||| ||||| |||| |||| || |||| |||||    
T  2519010 gttttgagacaaagcttgcaacccttctttaggaa 2519044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 119 - 225
Target Start/End: Complemental strand, 2621690 - 2621584
Alignment:
Q  119 gaagaaggttacaattcttgcagagatcgataatagattggcgaaccatcaatttaccatataaataaatcttgcggagtttgggaagttccaacaattg 218  Q
    ||||||||||||| ||||||||||||  | ||| | |||||||| | || || |||||  |||||| ||| |||||||||||||||||| |||||||  |    
T  2621690 gaagaaggttacagttcttgcagagagagttaacatattggcgatcgatgaaattacctgataaattaattttgcggagtttgggaagtgccaacaaccg 2621591  T
Q  219 atcatca 225  Q
    |||||||    
T  2621590 atcatca 2621584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 336
Target Start/End: Original strand, 5035301 - 5035357
Alignment:
Q  280 agttcttcgagtaaaggaaaacaatcagctatcaagaagagatgattcttgtcgata 336  Q
    ||||||||||||||||| ||||||||||| |||||||| |||| |||||||| ||||    
T  5035301 agttcttcgagtaaagggaaacaatcagcaatcaagaaaagatcattcttgttgata 5035357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 118 - 225
Target Start/End: Original strand, 2467041 - 2467148
Alignment:
Q  118 tgaagaaggttacaattcttgcagagatcgataatagattggcgaaccatcaatttaccatataaataaatcttgcggagtttgggaagttccaacaatt 217  Q
    |||||||||  ||| ||| ||||||||| | |||||||||||| | | || || |||| | |||||  ||||||||||||||| |||||||||| |||||    
T  2467041 tgaagaaggccacagttcctgcagagatagttaatagattggcaaccaataaaattacgagataaagcaatcttgcggagttttggaagttccagcaatt 2467140  T
Q  218 gatcatca 225  Q
    ||| ||||    
T  2467141 gattatca 2467148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 273 - 368
Target Start/End: Original strand, 2475952 - 2476047
Alignment:
Q  273 gagggtgagttcttcgagtaaaggaaaacaatcagctatcaagaagagatgattcttgtcgatataattaactttggaacaatttagagatgtcaa 368  Q
    |||| ||| |||||||||||||||||| |||| |||||  |||||||||| || ||||| |||||||||   |||| ||||| | |||||||||||    
T  2475952 gaggttgatttcttcgagtaaaggaaagcaattagctagaaagaagagatcatccttgtggatataattctttttgtaacaagtgagagatgtcaa 2476047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 118 - 225
Target Start/End: Original strand, 2477094 - 2477201
Alignment:
Q  118 tgaagaaggttacaattcttgcagagatcgataatagattggcgaaccatcaatttaccatataaataaatcttgcggagtttgggaagttccaacaatt 217  Q
    ||||||||||  || ||||||||||||| |  ||||||| | ||| |||| || |||  | |||||  |||||||||||||||||||||  |||||||||    
T  2477094 tgaagaaggtcgcagttcttgcagagatagtcaatagatcgtcgacccatgaaattaggagataaagcaatcttgcggagtttgggaagcgccaacaatt 2477193  T
Q  218 gatcatca 225  Q
    ||||||||    
T  2477194 gatcatca 2477201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 278 - 417
Target Start/End: Complemental strand, 2621534 - 2621395
Alignment:
Q  278 tgagttcttcgagtaaaggaaaacaatcagctatcaagaagagatgattcttgtcgatataattaactttggaacaatttagagatgtcaatttcttcat 377  Q
    ||||||||||||||||||| ||||||||||| |  ||||| |||| |||||||  ||| | ||||| |  | ||||| | ||||||||||| || |||||    
T  2621534 tgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggattttattaattcggtaacaagtgagagatgtcaaatttttcat 2621435  T
Q  378 cttttcagacagagctcgcaatccatcttcaggaatattg 417  Q
     ||||  || | ||||||||| ||||||  ||||||||||    
T  2621434 atttttggagaaagctcgcaacccatctgtaggaatattg 2621395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 278 - 332
Target Start/End: Complemental strand, 5106685 - 5106631
Alignment:
Q  278 tgagttcttcgagtaaaggaaaacaatcagctatcaagaagagatgattcttgtc 332  Q
    ||||||||||||||||||| ||||||||||| || |||||||||| | |||||||    
T  5106685 tgagttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactcttgtc 5106631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 274 - 331
Target Start/End: Original strand, 2546817 - 2546874
Alignment:
Q  274 agggtgagttcttcgagtaaaggaaaacaatcagctatcaagaagagatgattcttgt 331  Q
    ||||||| ||||||||||||||||||||||||||| || ||||| | || ||||||||    
T  2546817 agggtgaattcttcgagtaaaggaaaacaatcagcaatgaagaataaatcattcttgt 2546874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 279 - 331
Target Start/End: Complemental strand, 2368033 - 2367981
Alignment:
Q  279 gagttcttcgagtaaaggaaaacaatcagctatcaagaagagatgattcttgt 331  Q
    |||||||||||||||||| ||||||||||| || |||||||||| | ||||||    
T  2368033 gagttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactcttgt 2367981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 2475853 - 2475905
Alignment:
Q  173 taccatataaataaatcttgcggagtttgggaagttccaacaattgatcatca 225  Q
    ||||| |||||||||||||| |||||||||||||| | ||||||||| |||||    
T  2475853 taccaaataaataaatcttgtggagtttgggaagtccaaacaattgagcatca 2475905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 337
Target Start/End: Original strand, 2467219 - 2467278
Alignment:
Q  278 tgagttcttcgagtaaaggaaaacaatcagctatcaagaagagatgattcttgtcgatat 337  Q
    |||| |||||||||||||| ||||||||||| || ||||| ||||  |||||||||||||    
T  2467219 tgagctcttcgagtaaagggaaacaatcagcaatgaagaaaagatcgttcttgtcgatat 2467278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 216
Target Start/End: Complemental strand, 5102625 - 5102510
Alignment:
Q  101 caatcactttgacctgctgaagaaggttacaattcttgcagagatcgataatagattggcgaaccatcaatttaccatataaataaatcttgcggagttt 200  Q
    |||| |||||||| |  |||||||||| ||| ||| |||| |||| | |||||||||||  | | || || |||| | |||||  |||||||||||||||    
T  5102625 caatgactttgacatcttgaagaaggtcacagttcctgcaaagatggttaatagattgggtacctatgaaattacgagataaaacaatcttgcggagttt 5102526  T
Q  201 gggaagttccaacaat 216  Q
    ||||||| ||||||||    
T  5102525 gggaagtgccaacaat 5102510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 225
Target Start/End: Complemental strand, 5106765 - 5106726
Alignment:
Q  186 aatcttgcggagtttgggaagttccaacaattgatcatca 225  Q
    |||||||||||||||||||||| |||| ||||||||||||    
T  5106765 aatcttgcggagtttgggaagtgccaataattgatcatca 5106726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 278 - 336
Target Start/End: Original strand, 2490805 - 2490863
Alignment:
Q  278 tgagttcttcgagtaaaggaaaacaatcagctatcaagaagagatgattcttgtcgata 336  Q
    ||||||| ||||||||||| ||||||||||| || || ||||||| |||||||| ||||    
T  2490805 tgagttcgtcgagtaaagggaaacaatcagcaataaaaaagagatcattcttgttgata 2490863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 2382984 - 2382931
Alignment:
Q  172 ttaccatataaataaatcttgcggagtttgggaagttccaacaattgatcatca 225  Q
    |||||||| |||| |||||| ||||||||||||||| |||| ||||||| ||||    
T  2382984 ttaccatacaaattaatctttcggagtttgggaagtgccaaaaattgattatca 2382931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 172 - 212
Target Start/End: Complemental strand, 2368143 - 2368103
Alignment:
Q  172 ttaccatataaataaatcttgcggagtttgggaagttccaa 212  Q
    |||||| |||||| |||||||||||||||||||||| ||||    
T  2368143 ttaccagataaattaatcttgcggagtttgggaagtgccaa 2368103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 347 - 415
Target Start/End: Original strand, 2482526 - 2482594
Alignment:
Q  347 tggaacaatttagagatgtcaatttcttcatcttttcagacagagctcgcaatccatcttcaggaatat 415  Q
    |||||||| | ||||||||||| || |||||||||| ||| ||||||| ||| |||| ||| |||||||    
T  2482526 tggaacaagtgagagatgtcaaatttttcatctttttagatagagctctcaacccatgttcgggaatat 2482594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 271 - 319
Target Start/End: Complemental strand, 2625637 - 2625589
Alignment:
Q  271 gtgagggtgagttcttcgagtaaaggaaaacaatcagctatcaagaaga 319  Q
    |||||| ||||||||||||||||||| ||||||||| | || |||||||    
T  2625637 gtgaggttgagttcttcgagtaaagggaaacaatcaacaataaagaaga 2625589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 12126466 - 12126506
Alignment:
Q  172 ttaccatataaataaatcttgcggagtttgggaagttccaa 212  Q
    |||||| |||||| |||||||||||||||||||||| ||||    
T  12126466 ttaccagataaattaatcttgcggagtttgggaagtgccaa 12126506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University