View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17662_low_4 (Length: 501)
Name: NF17662_low_4
Description: NF17662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17662_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 455; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 16 - 486
Target Start/End: Complemental strand, 48806765 - 48806296
Alignment:
| Q |
16 |
caaaaccaaatcatatcaaacacatcaaaggcttcaatatgccaaacctcttacttctttgcataactatcaccatttgtctttcaactttcgacaccaa |
115 |
Q |
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| T |
48806765 |
caaaaccaaatcatatcaaacacatcaa-ggcttcaatatgccaaacctcttatttctttgcataactatcaccatttgtctttcaactttcgacaccaa |
48806667 |
T |
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| Q |
116 |
tttccttgtacaatccctcacttcaccctcagacattgaagctctcaaagccttcaaagcttcaatcaaaccctcatccatcacaccatggtcatgtgta |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48806666 |
tttccttgtacaatccctcacttcaccctcagacattgaagctctcaaagccttcaaagcttcaatcaaaccctcatccatcacaccatggtcatgtgta |
48806567 |
T |
|
| Q |
216 |
gcatcatggaacttcaccattgatccatgctcacaccctcgtcgcacttacttcttatgtggattcacctgcaccacagattccacacacatcaaccaaa |
315 |
Q |
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| T |
48806566 |
gcatcatggaacttcaccattgatccatgctcacaccctcgtcgcacttacttcttatgtggtttcacctgcaccacagattccacacacatcaaccaaa |
48806467 |
T |
|
| Q |
316 |
tcacactagaccctgcaagctactcaggctcactcacgccactcatctctaaactcacccaactcatcacactagacctctctgataacaacttctttgg |
415 |
Q |
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| T |
48806466 |
tcacactagaccctgcaagctactcaggctcactcacgccactcatctctaaactcacccaactcatcacactagacctctctgataacaacttctttgg |
48806367 |
T |
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| Q |
416 |
ctcaattccttcttcaatctcttccctttccaacctcaaaaccttaactctccgatccaattccttctctg |
486 |
Q |
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| T |
48806366 |
ctcaattccttcttcaatctcttccctttccaacctcaaaaccttaactctccgatccaattccttctctg |
48806296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 407 - 475
Target Start/End: Original strand, 13567584 - 13567652
Alignment:
| Q |
407 |
cttctttggctcaattccttcttcaatctcttccctttccaacctcaaaaccttaactctccgatccaa |
475 |
Q |
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| T |
13567584 |
cttctctggctctattccttcttcaatatcttccctttccaacctcaaaatcttaaccctctgatccaa |
13567652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 407 - 479
Target Start/End: Complemental strand, 31860152 - 31860080
Alignment:
| Q |
407 |
cttctttggctcaattccttcttcaatctcttccctttccaacctcaaaaccttaactctccgatccaattcc |
479 |
Q |
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| T |
31860152 |
cttctctgactctattccttcttcaatatctagcctttccaacctcaaaatcttaaccctctgatccaattcc |
31860080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 420 - 463
Target Start/End: Original strand, 44339175 - 44339218
Alignment:
| Q |
420 |
attccttcttcaatctcttccctttccaacctcaaaaccttaac |
463 |
Q |
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| T |
44339175 |
attccttcttcaatatcttccctttccaacctcaaaatcttaac |
44339218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 7e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 159 - 413
Target Start/End: Original strand, 34056906 - 34057160
Alignment:
| Q |
159 |
ctcaaagccttcaaagcttcaatcaaaccctcatccatcacaccatggtcatgtgtagcatcatggaacttcaccattgatccatgctcacaccctcgtc |
258 |
Q |
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|||||||| |||||||| |||| ||||||||| ||| ||||| || ||||| ||| |||||||||||||||||||||||| || ||| |||| || |
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| T |
34056906 |
ctcaaagcattcaaagcctcaaccaaaccctcttccgcgacaccttgatcatgcatagaatcatggaacttcaccattgatccttgttcagttcctcatc |
34057005 |
T |
|
| Q |
259 |
gcacttacttcttatgtggattcacctgcaccacagattccacacacatcaaccaaatcacactagaccctgcaagctactcaggctcactcacgccact |
358 |
Q |
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| T |
34057006 |
gcactcacttcatctgtgggttcacctacacctttgattccacacacatcaatcaaatcaccctcaaccctgcaagctactcaggctcactcacctcact |
34057105 |
T |
|
| Q |
359 |
catctctaaactcacccaactcatcacactagacctctctgataacaacttcttt |
413 |
Q |
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||||||| |||||||| |||| |||||||| |||| || | |||||||||||| |
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| T |
34057106 |
catctctcaactcaccaaacttgtcacactatacctatccggcaacaacttcttt |
34057160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 408 - 463
Target Start/End: Complemental strand, 5061940 - 5061885
Alignment:
| Q |
408 |
ttctttggctcaattccttcttcaatctcttccctttccaacctcaaaaccttaac |
463 |
Q |
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|||| |||||| |||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
5061940 |
ttctctggctctattccttcttcaatatcttccctttccaacctcaaaatcttaac |
5061885 |
T |
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