View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17662_low_5 (Length: 493)
Name: NF17662_low_5
Description: NF17662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17662_low_5 |
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| [»] scaffold0028 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 446; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 16 - 485
Target Start/End: Complemental strand, 38865040 - 38864571
Alignment:
| Q |
16 |
cttttctcatcattgcaacaaattcatcgtagttaatccgaccatcctgcacaaacatgcaaatttcatcgtaagttttctgaaataagaatcaaatatt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38865040 |
cttttctcatcattgcaacaaattcatcgtagttaatccgaccatcctgcacaaacatgcaaatttcatcgtaagttttctgaaataagaatcaaatatt |
38864941 |
T |
|
| Q |
116 |
aagtgcatcatgacactaacaaaatacttcttatggtctcgattacaagcaaaagaaaaactcatttaatggtctaaaatataaccagtcagtcctagac |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
38864940 |
aagtgcatcatgacactaacaaaatacttcttatggtctcgattataagcaaaagaaaaactcatttaatggtctaaaatataatcagtcagtcctagac |
38864841 |
T |
|
| Q |
216 |
ttacgttatctgcatcaacttctgaaatgatttcttttatgtacctgccatcatgcatgttatactcatggagagcttgctctagttcttcaatggtaat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38864840 |
ttacgttatctgcatcaacttctgaaatgatttcttttatgtacctaccatcatgcatgttatactcatggagagcttgctctagttcttcaatggtaat |
38864741 |
T |
|
| Q |
316 |
gtacctaattatggaaaagcaatgtgattagaagatataacaccaattagtatccaaatgagggccaaatatatattcaaccaagttgattttattgatt |
415 |
Q |
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| T |
38864740 |
gtacctaattatggaaaagcaatgtgattagaagatataacaccaattagtatccaaatgagggccaaatatatattcaaccaagttgattttattgatt |
38864641 |
T |
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| Q |
416 |
tatttaaattttctttacccgctgttatctttatcgaagtattggaaggcagcataaacatgttcatctc |
485 |
Q |
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| T |
38864640 |
tatttaaattttctttacccgttgttatctttatcgaagtattggaaggcagtataaacatgttcttctc |
38864571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 151 - 485
Target Start/End: Original strand, 38808487 - 38808818
Alignment:
| Q |
151 |
gtctcgattacaagcaaaagaaaaactcatttaatggtctaaaatataaccagtcagtcctagacttacgttatctgcatcaacttctgaaatgatttct |
250 |
Q |
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|||| ||||| |||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
38808487 |
gtcttgattataagcaaaagaaaaactcattcaatggtctaaaatataactagtcagtgctagacttacgttatctgcatcaacttctgaaatgatttct |
38808586 |
T |
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| Q |
251 |
tttatgtacctgccatcatgcatgttatactcatggagagcttgctctagttcttcaatggtaatgtacctaattatggaaaagcaatgtgattagaaga |
350 |
Q |
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| T |
38808587 |
tttatgtccctgccgtcatgcatgttatactcatggagagcttgctctagttcttcaatggtgatgtacctaattatggaaaagcagtgagatcagaaga |
38808686 |
T |
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| Q |
351 |
tataacaccaattagtatccaaatgagggccaaatatatattcaaccaagttgattttattgatttatttaaattttctttacccgctgttatctttatc |
450 |
Q |
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| | | ||||||||||||||| || || ||||||||||| |||||| |||| ||||| ||||||||| ||||||||||||||||||||||||||||| |
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| T |
38808687 |
ttt--gaacaattagtatccaaaggaagggcaaatatatatccaaccatgttggttttacggatttattt-aattttctttacccgctgttatctttatc |
38808783 |
T |
|
| Q |
451 |
gaagtattggaaggcagcataaacatgttcatctc |
485 |
Q |
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|||| |||||||||||| |||||||||||| |||| |
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| T |
38808784 |
gaagaattggaaggcagtataaacatgttcttctc |
38808818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 38808417 - 38808471
Alignment:
| Q |
23 |
catcattgcaacaaattcatcgtagttaatccgaccatcctgcacaaacatgcaa |
77 |
Q |
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| T |
38808417 |
catcattgcaacaaattcatcgtagttaatccgaccatcctgcacagacatgcaa |
38808471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 44; Significance: 8e-16; HSPs: 3)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 214 - 321
Target Start/End: Original strand, 72922 - 73029
Alignment:
| Q |
214 |
acttacgttatctgcatcaacttctgaaatgatttcttttatgtacctgccatcatgcatgttatactcatggagagcttgctctagttcttcaatggta |
313 |
Q |
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|||||| |||||| ||||||||||| || || ||||| |||| ||||||||||||||||| || ||| |||||||||| |||||||||||| ||||| |
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| T |
72922 |
acttacattatctccatcaacttcttgaagtatctctttgatgtctctgccatcatgcatgttgtattcacggagagcttgatctagttcttcagtggta |
73021 |
T |
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| Q |
314 |
atgtacct |
321 |
Q |
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| T |
73022 |
atgaacct |
73029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 72683 - 72735
Alignment:
| Q |
16 |
cttttctcatcattgcaacaaattcatcgtagttaatccgaccatcctgcaca |
68 |
Q |
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| T |
72683 |
cttttctcatcattgcagcaaattcatcatagttaatacgtccatcctgcaca |
72735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 429 - 485
Target Start/End: Original strand, 73150 - 73206
Alignment:
| Q |
429 |
tttacccgctgttatctttatcgaagtattggaaggcagcataaacatgttcatctc |
485 |
Q |
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|||||||||||||||||||||| |||||||||||||||| |||| |||||| |||| |
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| T |
73150 |
tttacccgctgttatctttatcaaagtattggaaggcagtgtaaagatgttcttctc |
73206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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