View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17662_low_6 (Length: 447)
Name: NF17662_low_6
Description: NF17662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17662_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 61 - 446
Target Start/End: Complemental strand, 44086962 - 44086578
Alignment:
| Q |
61 |
aagttaaattaactcacttaaattaatatcggagagatcgatgttgcgacttcaaagaagagtgcactttcagatcccaagtcaataccatcgaactaat |
160 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
44086962 |
aagttaaattaactcacttaaattaatatcggagagatcgatgttgcgacttcaaagaagagtacactttcagatcccaagtcaataccaccgaactaat |
44086863 |
T |
|
| Q |
161 |
ccaagtgagtttgcttgctcaatgagttaagacttaagaggctttggttctcaagaagggaaaaaccgtggaatattgtagttcaccatacgtgataaac |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44086862 |
ccaagtgagtttgcttgctcaatgagttaagacttgagaggctttggttctcaagaagggaaaaaccgtggaatattgtagttcaccatacgtgataaac |
44086763 |
T |
|
| Q |
261 |
gtgtttaattgtattactggtacatagtatcatcgagtttattggtaattatttctgtcggaaaatctaattgtccacatgataatgtgtttaagtgggt |
360 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
44086762 |
gtgtttaattgtattactggtacataatatcatccagtttattggtaattatttctgtcggaaaatctaattgtccacatgataatgtgtttaagggggt |
44086663 |
T |
|
| Q |
361 |
gtttaataaaaaatgcatgtaaataatcttgaatttaactgttgttgtattgaattggatgcatgaaatgacgaattttttaattt |
446 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44086662 |
gtttaata-aaaatgcatgtaaataatcttgaatttaactgttgttgtattgaattggatgcatgaaatgacgaattttttaattt |
44086578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 44087023 - 44086979
Alignment:
| Q |
7 |
tccaagaatatgaccaatattactttctagttgcttgctcgtgag |
51 |
Q |
| |
|
|||||| | |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
44087023 |
tccaagtaaatgatcaatattactttctagttgcttgctcgtgag |
44086979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 97
Target Start/End: Original strand, 18313793 - 18313829
Alignment:
| Q |
61 |
aagttaaattaactcacttaaattaatatcggagaga |
97 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
18313793 |
aagttaaattaacccacttaaattaatatcgaagaga |
18313829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University