View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17663_low_3 (Length: 329)
Name: NF17663_low_3
Description: NF17663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17663_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 53613807 - 53613500
Alignment:
| Q |
1 |
tatcagctgaggtcatactcattttatcatcacatattctcccttttttccttttattttgctttattattaaaccaagttcatttctgtactgatatat |
100 |
Q |
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| T |
53613807 |
tatcagctgaggtcatactcattttatcatcacaaattctcccttttttccttttattttgctttattattaaaccaagttcatttctgtactgatatat |
53613708 |
T |
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| Q |
101 |
acgtcgaaattatcaggtgattgaagttgctccggctcattgtgttgtacaagtatcaaaatctgtaggagatctaagaatgtataatgaggtaagaaaa |
200 |
Q |
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| T |
53613707 |
acgtcgaaattatcaggtgattgaagttgctccggctcattgtgttgtacaagtatcaaaatctgtaggagatctaagaatgtataatgaggtaagaaaa |
53613608 |
T |
|
| Q |
201 |
cacatcctgttaattgaatattcataagatcataaatatggttaccgatttaattttgattatcagttttgtgaaagtttatcaaacctgctgaaagacg |
300 |
Q |
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| T |
53613607 |
catatcctgttaattgaatattcataagatcataaatatggttaccgatttaattttgattatcagttttgtgaaagtttatcaaacctgctgaaagacg |
53613508 |
T |
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| Q |
301 |
aatctagt |
308 |
Q |
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|||||||| |
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| T |
53613507 |
aatctagt |
53613500 |
T |
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