View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17663_low_5 (Length: 218)
Name: NF17663_low_5
Description: NF17663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17663_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 129; Significance: 6e-67; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 17 - 177
Target Start/End: Complemental strand, 17081020 - 17080860
Alignment:
| Q |
17 |
caaaggatggtgagttgacaaataaaagataccaaaagaagagatctgaatttatagaggaagggatggatgcgtaattcatatatatgagagggaaagg |
116 |
Q |
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| T |
17081020 |
caaaggatggtgagttgacaaatgaaaaataccaaaagaagagatctgaatttatagaagaaggggtggatgcgtaatttgtatatatgaaagggaaaag |
17080921 |
T |
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| Q |
117 |
attaattttgaattcaaattccgtatccattgaatcttttgttataaaagcttgttaaatt |
177 |
Q |
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| T |
17080920 |
attaattttgaattcaaattccgtatccattgaatcttttgttataaaagcttgttaaatt |
17080860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 198
Target Start/End: Complemental strand, 17080844 - 17080808
Alignment:
| Q |
162 |
aaaagcttgttaaatttcattttttgcacgactaatt |
198 |
Q |
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| T |
17080844 |
aaaagcttgttaaatttcattttttgcacgactaatt |
17080808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 183
Target Start/End: Complemental strand, 5494922 - 5494755
Alignment:
| Q |
17 |
caaaggatggtgagttgacaaataaaagataccaaaagaagagatctgaatttatagaggaagggatggatgcgtaattcatatatatgagagggaaagg |
116 |
Q |
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| T |
5494922 |
caaaggagagtgagttgataaatgagagattccaaaagtagagatctaaatttatagaagaatgggtgaatgtgtaatttgtatatttgggagggaaaat |
5494823 |
T |
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| Q |
117 |
attaattttgaattcaaattccgtat-ccattgaatcttttgttataaaagcttgttaaatttcattt |
183 |
Q |
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| T |
5494822 |
gttaattttgaattcaaatttcgtatgtcgttgaatctctttttataaaagcctaataaatttcattt |
5494755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 18 - 183
Target Start/End: Complemental strand, 22818842 - 22818676
Alignment:
| Q |
18 |
aaaggatggtgagttgacaaataaaagataccaaaagaagagatctgaatttatagaggaagggatggatgcgtaattcatatatatgagagggaaagga |
117 |
Q |
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| T |
22818842 |
aaaggacggtgagttgacaaatgagagataccaaaagcaaagatttgaatttatagagtaacgaatggatgcataatttgtatatatcgaagggaaaaga |
22818743 |
T |
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| Q |
118 |
ttaattttgaattcaaattccgtat-ccattgaatcttttgttataaaagcttgttaaatttcattt |
183 |
Q |
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| T |
22818742 |
ataatttcgaattcgtatttcatatcccattgagtctctagttataaaagtatgttaaattttattt |
22818676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 22803532 - 22803351
Alignment:
| Q |
17 |
caaaggatggtgagttgacaaataaaagataccaaaagaagagatctgaatttatagaggaagggatggatgcgtaattcatatatatgagagggaaagg |
116 |
Q |
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||||||| ||||| ||||||||| | |||||||||||| | | || || ||||||| ||||| || || ||||||||| ||||| || |||||||| | |
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| T |
22803532 |
caaaggacggtgaattgacaaatgagagataccaaaagcaaaaatttgtatttatacaggaactgacgggtgcgtaatttgtatatttgggagggaaaag |
22803433 |
T |
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| Q |
117 |
attaattttgaattcaaattccgtatc-cattgaatcttttgttataaaagcttgttaaatttcattttttgcacgactaatt |
198 |
Q |
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| T |
22803432 |
attaatttcaaattc-gttttcatatctcattgaatctttagttataaaagtctgttaaatttcatttatggtacgactaatt |
22803351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 165
Target Start/End: Complemental strand, 5508222 - 5508085
Alignment:
| Q |
29 |
agttgacaaataaaagataccaaaagaagagatctgaatttatagaggaagggatggatgcgtaattcatatatatgagagggaaaggattaattttgaa |
128 |
Q |
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|||||||| || |||||| ||||||| | |||| |||||||||| | ||||||||||||| ||||| ||||| || ||||| || ||||||||||| |
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| T |
5508222 |
agttgacagatgaaagattccaaaagcatagatatgaatttatataagaagggatggatgtataatttgtatatttgggaggggaaatgttaattttgaa |
5508123 |
T |
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| Q |
129 |
ttcaaattccgtatc-cattgaatcttttgttataaaa |
165 |
Q |
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| T |
5508122 |
ttcaaatttcacatctcaatgaatctcttgttataaaa |
5508085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 114
Target Start/End: Original strand, 25128744 - 25128815
Alignment:
| Q |
43 |
agataccaaaagaagagatctgaatttatagaggaagggatggatgcgtaattcatatatatgagagggaaa |
114 |
Q |
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| T |
25128744 |
agatacgaaaagtagagatctgaatttatagaggaatgaacttatgcgtaattcatatttttgggagggaaa |
25128815 |
T |
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