View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17664_high_13 (Length: 329)
Name: NF17664_high_13
Description: NF17664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17664_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 14 - 320
Target Start/End: Complemental strand, 32688381 - 32688075
Alignment:
| Q |
14 |
cacatatcacttatgatacgcttttgagtatttacacgagctatctgaccgacgcgaaatcgtatgcgaatcagcctggggaggaagattcgatggaatg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32688381 |
cacatatcacttatgatacgcttttgagtatttacacgagctatctgaccgaagcgaaatcgtatgcgaatcagcctggggaggaagattcgatggaatg |
32688282 |
T |
|
| Q |
114 |
gtaccgaactcggtgcatcagagcttttctgctctatctagttggttgcacattgttcagtgataaggccggcagtagctgttgtgttgtctatttgaaa |
213 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32688281 |
gtaccggactcggtgcatcagagcttttctgctctatctagttggttgcacattgttcagtgataaggccggcagtagctgttgtgttgtctatttgaaa |
32688182 |
T |
|
| Q |
214 |
tactttgacgacatgactacgcttaatcaatggtcatagggtgccgctgctcttgctttcctctacaattatttaggtgactttactaaacccagttgta |
313 |
Q |
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|
||||||||||| |||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32688181 |
tactttgacgaactgactacggttaatcaatggtcatggggtgccactgctcttgctttcctctacaattatttaggtgactttactaaacccagttgta |
32688082 |
T |
|
| Q |
314 |
cgtcctt |
320 |
Q |
| |
|
||||||| |
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|
| T |
32688081 |
cgtcctt |
32688075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 14 - 250
Target Start/End: Complemental strand, 19811498 - 19811262
Alignment:
| Q |
14 |
cacatatcacttatgatacgcttttgagtatttacacgagctatctgaccgacgcgaaatcgtatgcgaatcagcctggggaggaagattcgatggaatg |
113 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
19811498 |
cacatatcacttatgatacgcttctgagtatttacacgagctatctgaccgaagcgaaatcgtatgcgaatcagcctgaggaggaagattcaatggaatg |
19811399 |
T |
|
| Q |
114 |
gtaccgaactcggtgcatcagagcttttctgctctatctagttggttgcacattgttcagtgataaggccggcagtagctgttgtgttgtctatttgaaa |
213 |
Q |
| |
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|||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
19811398 |
gtaccggactcggtgcatcagagctttcctgctctatctagttggttgcacattgttcagtgataaggccggcaatagctgttgtgttgtctatttgaaa |
19811299 |
T |
|
| Q |
214 |
tactttgacgacatgactacgcttaatcaatggtcat |
250 |
Q |
| |
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|||||||||||| |||||||| |||||||||| |||| |
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| T |
19811298 |
tactttgacgacctgactacggttaatcaatgatcat |
19811262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 14 - 85
Target Start/End: Complemental strand, 22520565 - 22520494
Alignment:
| Q |
14 |
cacatatcacttatgatacgcttttgagtatttacacgagctatctgaccgacgcgaaatcgtatgcgaatc |
85 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||| ||||| |
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|
| T |
22520565 |
cacatatcacttatgatacgcttctgagtatttacacgagctatctgactgaagcgaaatcgtatgtgaatc |
22520494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 14 - 320
Target Start/End: Complemental strand, 1200605 - 1200299
Alignment:
| Q |
14 |
cacatatcacttatgatacgcttttgagtatttacacgagctatctgaccgacgcgaaatcgtatgcgaatcagcctggggaggaagattcgatggaatg |
113 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||| |||||||| |
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| T |
1200605 |
cacatatcacttatgatacgcttctgagtatttacacgagctatctgaccgaagcgaaatcgtatgtgaatcagcctgaggaggaagattcaatggaatg |
1200506 |
T |
|
| Q |
114 |
gtaccgaactcggtgcatcagagcttttctgctctatctagttggttgcacattgttcagtgataaggccggcagtagctgttgtgttgtctatttgaaa |
213 |
Q |
| |
|
|||||| ||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1200505 |
gtaccggacttggtgcatcagagctttcctgctctatctagttggttgcacatttttcagtgataaggccggcagtagctgttgtgttgtctatttgaaa |
1200406 |
T |
|
| Q |
214 |
tactttgacgacatgactacgcttaatcaatggtcatagggtgccgctgctcttgctttcctctacaattatttaggtgactttactaaacccagttgta |
313 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1200405 |
tactttgacgacctgactacggttaatcaatggtcatggggtgccgctgctcttgctttcctctacaattatttaggtgactttactaaacccagttgta |
1200306 |
T |
|
| Q |
314 |
cgtcctt |
320 |
Q |
| |
|
| ||||| |
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|
| T |
1200305 |
catcctt |
1200299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 14 - 169
Target Start/End: Original strand, 25748775 - 25748930
Alignment:
| Q |
14 |
cacatatcacttatgatacgcttttgagtatttacacgagctatctgaccgacgcgaaatcgtatgcgaatcagcctggggaggaagattcgatggaatg |
113 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
25748775 |
cacatatcacttatgatacgcttatgagtatttacacgagctatctgaccgaagcaaaatcatatgcgaatcagcctggggaggaagattcaatggaatg |
25748874 |
T |
|
| Q |
114 |
gtaccgaactcggtgcatcagagcttttctgctctatctagttggttgcacattgt |
169 |
Q |
| |
|
|||| | ||||||||||| |||||||| ||||| ||||||||| | ||||| |||| |
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|
| T |
25748875 |
gtactggactcggtgcattagagctttcctgctttatctagttagctgcacgttgt |
25748930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 76 - 285
Target Start/End: Complemental strand, 47852059 - 47851850
Alignment:
| Q |
76 |
tatgcgaatcagcctggggaggaagattcgatggaatggtaccgaactcggtgcatcagagcttttctgctctatctagttggttgcacattgttcagtg |
175 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||| |||| |||||| |||||||| ||||||||||||||||| ||||||||||| |||| |
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| T |
47852059 |
tatgcgaatcagcctggggaggaagtagcattggaatggtaccagactcagtgcattagagctttcctgctctatctagttggctgcacattgtttagtg |
47851960 |
T |
|
| Q |
176 |
ataaggccggcagtagctgttgtgttgtctatttgaaatactttgacgacatgactacgcttaatcaatggtcatagggtgccgctgctcttgctttcct |
275 |
Q |
| |
|
||||| | |||||| | ||||||||||| || |||||||||||||||||| | ||||| ||||||||||||||| |||||||||||||||| ||||||| |
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|
| T |
47851959 |
ataagactggcagtggttgttgtgttgtttacttgaaatactttgacgacctaactacagttaatcaatggtcatggggtgccgctgctcttactttcct |
47851860 |
T |
|
| Q |
276 |
ctacaattat |
285 |
Q |
| |
|
||||||||| |
|
|
| T |
47851859 |
atacaattat |
47851850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 80 - 285
Target Start/End: Complemental strand, 18296623 - 18296418
Alignment:
| Q |
80 |
cgaatcagcctggggaggaagattcgatggaatggtaccgaactcggtgcatcagagcttttctgctctatctagttggttgcacattgttcagtgataa |
179 |
Q |
| |
|
|||||||||||| |||||||| | |||||||||||| ||||||||||| |||||||| |||||||||||||||| ||||||||||| |||||||| |
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|
| T |
18296623 |
cgaatcagcctgaggaggaagtaacattggaatggtaccagactcggtgcattagagctttcttgctctatctagttggctgcacattgtttagtgataa |
18296524 |
T |
|
| Q |
180 |
ggccggcagtagctgttgtgttgtctatttgaaatactttgacgacatgactacgcttaatcaatggtcatagggtgccgctgctcttgctttcctctac |
279 |
Q |
| |
|
| | || ||| | ||||||||||| || ||||||||||||||||| ||||||| ||||||||||||||| ||||||| |||||||||||||||| ||| |
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|
| T |
18296523 |
gactggtagtggttgttgtgttgtttacttgaaatactttgacgatctgactacagttaatcaatggtcatggggtgcctctgctcttgctttcctatac |
18296424 |
T |
|
| Q |
280 |
aattat |
285 |
Q |
| |
|
||||| |
|
|
| T |
18296423 |
gattat |
18296418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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