View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17664_high_14 (Length: 311)
Name: NF17664_high_14
Description: NF17664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17664_high_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 303
Target Start/End: Complemental strand, 22006523 - 22006240
Alignment:
| Q |
19 |
acagcaaatgtaaacctggaataatttcccaagtccatagtcagtgatgttggttttccgatggattgtgcatatcccggtcctggttgcacaattggag |
118 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
22006523 |
acagcaaatgtaaacctggaataatttcc-aagtccatagtcagtgatgttggtttgccgatggatggtgcatatcccggtcctggttgcacaagtggag |
22006425 |
T |
|
| Q |
119 |
ctgatctttatgatccagatcaaccactgtggattgatagaggtttggaatcttcaaatgtgctcctaaatatgcagtcgtcaaagattgatgatgccgg |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||| |||||||||||||| || |||||||||||||| | |
|
|
| T |
22006424 |
ctgatctttatgatccagatcaaccactgtggaatgatagaggtctggaatcttcaaatgcgcttctaaatatgcagtcatcgaagattgatgatgctga |
22006325 |
T |
|
| Q |
219 |
gcctatgtctagcgacgctccaaataatgtttgtccagttgaagctaccagaacttctgtcaatttacatggtgccaattcatct |
303 |
Q |
| |
|
|||||||||||| || |||||||||| ||||||||| |||||||||||||||||||| || |||||| ||||||| ||||||| |
|
|
| T |
22006324 |
gcctatgtctagtgatgctccaaatagagtttgtccaagtgaagctaccagaacttctggcagtttacacggtgccagttcatct |
22006240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 23 - 303
Target Start/End: Original strand, 22037937 - 22038214
Alignment:
| Q |
23 |
caaatgtaaacctggaataatttcccaagtccatagtcagtgatgttggttttccgatggattgtgcatatcccggtcctggttgcacaattggagctga |
122 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| | |||| || ||| || |||||||||||| ||||| |||||||| ||||||||| |
|
|
| T |
22037937 |
caaatgtaaacctggaataatttcc-aagtccatagtcagtgatggttgtttgccaatgaatggtgcatatcccgatcctgattgcacaagtggagctga |
22038035 |
T |
|
| Q |
123 |
tctttatgatccagatcaaccactgtggattgatagaggtttggaatcttcaaatgtgctcctaaatatgcagtcgtcaaagattgatgatgccgggcct |
222 |
Q |
| |
|
|||||||||||||||||||||||| | || ||||| |||| |||||| |||||||| |||||||| |||||||| || |||||||||||||||| |||| |
|
|
| T |
22038036 |
tctttatgatccagatcaaccactattgaatgataaaggtctggaattttcaaatgcgctcctaa--atgcagtcatcgaagattgatgatgccgagcct |
22038133 |
T |
|
| Q |
223 |
atgtctagcgacgctccaaataatgtttgtccagttgaagctaccagaacttctgtcaatttacatggtgccaattcatct |
303 |
Q |
| |
|
|||||||| || |||||||||| ||||| || |||||||||||||||||||||||||| |||||| |||||| ||||||| |
|
|
| T |
22038134 |
atgtctagtgatgctccaaatagtgtttttcaagttgaagctaccagaacttctgtcagtttacagtgtgccagttcatct |
22038214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 19 - 167
Target Start/End: Original strand, 539287 - 539434
Alignment:
| Q |
19 |
acagcaaatgtaaacctggaataatttcccaagtccatagtcagtgatgttggttttccgatggattgtgcatatcccggtcctggttgcacaattggag |
118 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
539287 |
acagcaaatgtaaacctggaataatttcc-aagtccattgtcagtgatgttggttcgtcgatggatggtgcatatcccggtcctggttgcacaagtggag |
539385 |
T |
|
| Q |
119 |
ctgatctttatgatccagatcaaccactgtggattgatagaggtttgga |
167 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| ||| |||| |
|
|
| T |
539386 |
ctgatctttatgatccagatcaaccactgtggaatgataggggtctgga |
539434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 203 - 303
Target Start/End: Original strand, 539434 - 539534
Alignment:
| Q |
203 |
agattgatgatgccgggcctatgtctagcgacgctccaaataatgtttgtccagttgaagctaccagaacttctgtcaatttacatggtgccaattcatc |
302 |
Q |
| |
|
|||| |||||||| | |||||||||||| || |||||| ||| ||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||| |
|
|
| T |
539434 |
agatcgatgatgctgagcctatgtctagtgatgctccagatagtgtttgtccagttgaagctaccagaacttctgtcagtttacagggtgccagttcatc |
539533 |
T |
|
| Q |
303 |
t |
303 |
Q |
| |
|
| |
|
|
| T |
539534 |
t |
539534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University