View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17664_high_22 (Length: 249)
Name: NF17664_high_22
Description: NF17664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17664_high_22 |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 40842250 - 40842487
Alignment:
| Q |
1 |
cttctcaatcgtgtggtatatgatttgaggggagagaagagaacttacatgcttaatgattttcaaattcaatttacggtgacttattcttctatgactt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
40842250 |
cttctcaatcgtgtggtatatgatttgaggggagagaggagaacttacatgcttaatgcttttcaaattcaatttacggtgacttattcttctatgactc |
40842349 |
T |
|
| Q |
101 |
tagctgatgcagtttttgtttctaattacaaaaaataagggaagttatgttgatagtggattgaatactaatgttgctattatttctctcaagtgcagcc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
40842350 |
tagctgatgcagtttttgtttctaattacaaaaaataagggaagttatgttgatagtggattgaatactaatgttgctattatttatctcaagtgcagcc |
40842449 |
T |
|
| Q |
201 |
actaagccaaataattaggaggtatattgtgcaaccta |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
40842450 |
actaagccaaataattaggaggtatattgtgcaaccta |
40842487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 41959066 - 41959306
Alignment:
| Q |
1 |
cttctcaatcgtgtggtatatgatttgaggggagagaagagaacttacatgcttaatgattttcaaattcaatttacggtgacttattcttctatgactt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
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| T |
41959066 |
cttctcaatcgtgtggtatatgatttgaggggagagaggagaacttacatgcttaatgcttttcaaattcaatttacggtgacttattcttctataactc |
41959165 |
T |
|
| Q |
101 |
tagctgatgcagtttt--tgtttctaattacaaaaaataagggaagttatgttgatagtggattgaatactaatgttgctattatttctctcaagtgcag |
198 |
Q |
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|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
41959166 |
tagctgatgcagtttttttgtttctaattaccaaaaataagggaagttatgttgatagtggattgaatactaatgttgctattatttatctcaagttcag |
41959265 |
T |
|
| Q |
199 |
ccactaagccaaataattaggaggtatattgtgcaacctat |
239 |
Q |
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||||||||||||||||||||| ||||||||||||||||||| |
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| T |
41959266 |
ccactaagccaaataattagggggtatattgtgcaacctat |
41959306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 42078211 - 42078265
Alignment:
| Q |
168 |
ctaatgttgctattatttctctcaagtgcagccactaagccaaataattaggagg |
222 |
Q |
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|||||||||| |||||||||| ||||| |||| |||||||||||||||||||||| |
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| T |
42078211 |
ctaatgttgccattatttctcacaagtacagctactaagccaaataattaggagg |
42078265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 29587081 - 29586841
Alignment:
| Q |
1 |
cttctcaatcgtgtggtatatgatttgaggggagagaagagaacttacatgcttaatgattttcaaattcaatttacggtgacttattcttctatgactt |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||| | ||||||||||||||||| |
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| T |
29587081 |
cttctcaatcgtgtgatatatgatttgaggggagagaggagaacttacatgcttaatgcttttccaattcaatttacgacggcttattcttctatgactc |
29586982 |
T |
|
| Q |
101 |
tagctgatgcagtttttgtttctaattacaaaaaataagggaagttatgttgatagtggattgaatactaatgttgctatta-tttctctcaagtgcagc |
199 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
29586981 |
tagctgatgcagtttttgtttctaattaccaaaaataagggaagttatgttgatagtggattgaatactaatgttgctattattttctctcaagtgcagc |
29586882 |
T |
|
| Q |
200 |
cactaagccaaataattaggaggtatattgtgcaacctatg |
240 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
29586881 |
cactaagccaaataattaggaagtatattgtgcaacctatg |
29586841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 114 - 240
Target Start/End: Complemental strand, 9992598 - 9992472
Alignment:
| Q |
114 |
ttttgtttctaattacaaaaaataagggaagttatgttgatagtggattgaatactaatgttgctattatttctctcaagtgcagccactaagccaaata |
213 |
Q |
| |
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|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9992598 |
ttttgtttctaattaccaaaaataagggaacttatgttgatagtggattgaatactaatgttgctattatttctctcaagtgcagccactaagccaaata |
9992499 |
T |
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| Q |
214 |
attaggaggtatattgtgcaacctatg |
240 |
Q |
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||||||||||||||||||||||||||| |
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| T |
9992498 |
attaggaggtatattgtgcaacctatg |
9992472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 9992858 - 9992746
Alignment:
| Q |
1 |
cttctcaatcgtgtggtatatgatttgaggggagagaagagaacttacatgcttaatgattttcaaattcaatttacggtga----cttattcttctatg |
96 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
9992858 |
cttctcaaccgtgtggtatatgatttgagaggagagaggagaacttacatgcttaatgcttttcaaattcaatttacggtgacttacttattcttctatg |
9992759 |
T |
|
| Q |
97 |
actttagctgatg |
109 |
Q |
| |
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||| ||| ||||| |
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| T |
9992758 |
actctagttgatg |
9992746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 41943780 - 41943835
Alignment:
| Q |
168 |
ctaatgttgctattatttctctcaa-gtgcagccactaagccaaataattaggagg |
222 |
Q |
| |
|
|||||||||| |||||||||| ||| || ||||||||||||||||||||||||||| |
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|
| T |
41943780 |
ctaatgttgccattatttctcacaatgtacagccactaagccaaataattaggagg |
41943835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 10345414 - 10345467
Alignment:
| Q |
168 |
ctaatgttgctattatttctctcaagtgcagccactaagccaaataattaggagg |
222 |
Q |
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|||||||||| |||||||||| ||||| ||||||||||||| ||||||||||||| |
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| T |
10345414 |
ctaatgttgccattatttctcacaagtacagccactaagcc-aataattaggagg |
10345467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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