View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17664_high_4 (Length: 470)
Name: NF17664_high_4
Description: NF17664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17664_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 216 - 452
Target Start/End: Complemental strand, 45918650 - 45918414
Alignment:
| Q |
216 |
ccaacttcagtgaagtaaggaagtacaccacccaacttcgagaaattatgcattctttctgcaactaatgcaccactcaatgcaacacagcaaatacacc |
315 |
Q |
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| T |
45918650 |
ccaacttcagtgaagtaaggaagtacaccacccaacttcgagaaattatgcattctttctgcaactaatgcaccactcaatgcaacacaacaaatacacc |
45918551 |
T |
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| Q |
316 |
actcaatgaagcaagggtgttattgaaattttttacgtatctaaaaaggaagtttacgttgtcattcgtctctttaaattgcacgagaatcatatttttg |
415 |
Q |
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| T |
45918550 |
actcaatgaagcaagggtgttattgaaattttttacgtatctaaaaaggaagtttacgttgtcattcgtctctttaaattgcacgagaatcatatttttg |
45918451 |
T |
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| Q |
416 |
atgtgaaacccatttctataaatcattggttccatgt |
452 |
Q |
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| T |
45918450 |
atgtgaaacccatttctataaatcattggttccatgt |
45918414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 205
Target Start/End: Complemental strand, 45918718 - 45918687
Alignment:
| Q |
174 |
atcacactatacgcaccatgtggaaagcattg |
205 |
Q |
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| T |
45918718 |
atcacactatacgcaccatgtggaaagcattg |
45918687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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