View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17664_low_13 (Length: 329)
Name: NF17664_low_13
Description: NF17664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17664_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 167 - 253
Target Start/End: Complemental strand, 14044853 - 14044767
Alignment:
| Q |
167 |
aaatgtatttgtctaacggaatttcagcacatgactgctggaattaaaatgtatttatgttcacatttcaataaaaatttatctatg |
253 |
Q |
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| T |
14044853 |
aaatgtatttgtctaacgaaatttcagcacatgactgctggaattaaaatgtatttatgttcacatttcaataaaaatttatctatg |
14044767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 158 - 237
Target Start/End: Complemental strand, 14020607 - 14020524
Alignment:
| Q |
158 |
gagctcaaaaaatgtatttgtctaacggaatttcagcacatgactgctgg----aattaaaatgtatttatgttcacatttcaa |
237 |
Q |
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| T |
14020607 |
gagctcaaaaaatgtatttgtctaacggaatttcagcacatgaccggtggaattaattaaaatgtatttatgttcacatttcaa |
14020524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 239 - 309
Target Start/End: Original strand, 13475630 - 13475700
Alignment:
| Q |
239 |
aaaaatttatctatgtttctttcaccaaaaagcttaagataattagtttatgacaattggcaatactgata |
309 |
Q |
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| T |
13475630 |
aaaaagttatatatgtttctttcacctaaaagcttaagatagttagtttataacaattgacaatactgata |
13475700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 239 - 309
Target Start/End: Complemental strand, 14020480 - 14020410
Alignment:
| Q |
239 |
aaaaatttatctatgtttctttcaccaaaaagcttaagataattagtttatgacaattggcaatactgata |
309 |
Q |
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| T |
14020480 |
aaaaattaatttatgtttctttcaccaaaaagcctaagatagttagtatttgataattgacaatactgata |
14020410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 133
Target Start/End: Complemental strand, 14044896 - 14044861
Alignment:
| Q |
98 |
attcagttatgttccagctagttctccatcatccgt |
133 |
Q |
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| T |
14044896 |
attcagttatgttccagctagttctccatcatccgt |
14044861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 253
Target Start/End: Complemental strand, 14044720 - 14044689
Alignment:
| Q |
222 |
tatgttcacatttcaataaaaatttatctatg |
253 |
Q |
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| T |
14044720 |
tatgttcacatttcaataaaaatttatctatg |
14044689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 193
Target Start/End: Original strand, 13475564 - 13475594
Alignment:
| Q |
163 |
caaaaaatgtatttgtctaacggaatttcag |
193 |
Q |
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| T |
13475564 |
caaaaaatgtatttgtctaacggaatttcag |
13475594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 10507760 - 10507812
Alignment:
| Q |
163 |
caaaaaatgtatttgtctaacggaatttcagcacatgactgctggaattaaaa |
215 |
Q |
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| T |
10507760 |
caaaaaatgtatttgtctatctgaatttcagcacatgacaggtggaattaaaa |
10507812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 281 - 313
Target Start/End: Original strand, 10507846 - 10507878
Alignment:
| Q |
281 |
ttagtttatgacaattggcaatactgatataga |
313 |
Q |
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| T |
10507846 |
ttagtttatgacaattgacaatactgatataga |
10507878 |
T |
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