View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17664_low_16 (Length: 302)

Name: NF17664_low_16
Description: NF17664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17664_low_16
NF17664_low_16
[»] chr7 (5 HSPs)
chr7 (146-286)||(11240438-11240578)
chr7 (191-286)||(11240695-11240790)
chr7 (1-81)||(11240643-11240723)
chr7 (12-81)||(11240386-11240455)
chr7 (146-183)||(11240284-11240321)
[»] chr4 (2 HSPs)
chr4 (196-266)||(11864390-11864460)
chr4 (1-81)||(11864318-11864398)


Alignment Details
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 146 - 286
Target Start/End: Complemental strand, 11240578 - 11240438
Alignment:
Q  146 ccaaaatcaagtatgagacattgcacatagattcatattcattgcacatcagtcatacaagagtgatcatactcaaataaacaccaagagcttcttacat 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11240578 ccaaaatcaagtatgagacattgcacatagattcatattcattgcacatcagtcatacaagagtgatcatactcaaataaacaccaagagcttcttacat 11240479  T
Q  246 cattctccattcattataaatttacaaaatacacttgcatt 286  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  11240478 cattctccattcattataaatttacaaaatacactagcatt 11240438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 191 - 286
Target Start/End: Complemental strand, 11240790 - 11240695
Alignment:
Q  191 acatcagtcatacaagagtgatcatactcaaataaacaccaagagcttcttacatcattctccattcattataaatttacaaaatacacttgcatt 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||| |||||    
T  11240790 acatcagtcatacaagagtgatcatactcaaataaacaccaagagcttcttacatcattctccattcatcataaatcaacaaaatacactagcatt 11240695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 11240723 - 11240643
Alignment:
Q  1 atcataaatcaacaaaatacactagcattatgatataaaagtataaccatatactcatatccacttatgttcaaataaagc 81  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11240723 atcataaatcaacaaaatacactagcattatcatataaaagtataaccatatactcatatccacttatgttcaaataaagc 11240643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 12 - 81
Target Start/End: Complemental strand, 11240455 - 11240386
Alignment:
Q  12 acaaaatacactagcattatgatataaaagtataaccatatactcatatccacttatgttcaaataaagc 81  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11240455 acaaaatacactagcattatcatataaaagtataaccatatactcatatccacttatgttcaaataaagc 11240386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 183
Target Start/End: Complemental strand, 11240321 - 11240284
Alignment:
Q  146 ccaaaatcaagtatgagacattgcacatagattcatat 183  Q
    ||||||||||||||||||||||||||||||||||||||    
T  11240321 ccaaaatcaagtatgagacattgcacatagattcatat 11240284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 196 - 266
Target Start/End: Complemental strand, 11864460 - 11864390
Alignment:
Q  196 agtcatacaagagtgatcatactcaaataaacaccaagagcttcttacatcattctccattcattataaat 266  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  11864460 agtcatacaagagtgatcatactcaaataagcaccaagagcttcttacatcattctccattcatcataaat 11864390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 11864398 - 11864318
Alignment:
Q  1 atcataaatcaacaaaatacactagcattatgatataaaagtataaccatatactcatatccacttatgttcaaataaagc 81  Q
    ||||||||||| |||| ||||||||||| || || |||||||||||||||| ||| || ||||  ||| |||| |||||||    
T  11864398 atcataaatcatcaaattacactagcatcatcatttaaaagtataaccatagacttatctccatctatattcacataaagc 11864318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University