View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17664_low_17 (Length: 302)
Name: NF17664_low_17
Description: NF17664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17664_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 37001903 - 37001618
Alignment:
| Q |
1 |
ttcagaaacatcttgataaacaccaaccctaatatttcccgtaaattcaacactaggaacaaaatctccaaccaaaacatcttttttgtcaacaaggtcc |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37001903 |
ttcagaaacatcttgataaacaccaaccctgatatttcccgtaaattcaacactaggaacaaaatctccaaccaaaacatcttttttgtcaacaaggtcc |
37001804 |
T |
|
| Q |
101 |
atatcaaagagatgggagaaagacttacaatcaagaactgcaatgatgttaggattaacgttggtgaagaaagggaacgtgggtggaacattggtacgga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37001803 |
atatcaaagagatgggagaaagacttacaatcaagaactgcaatgatgttaggattaacgttggtgaagaaagggaacgtgggtggaacattggtacgga |
37001704 |
T |
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| Q |
201 |
acacagtacttttgtacttgtccattcgtgttctgaagaagttttctggcttctggaaccagaaataatctaacctgtctgataag |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37001703 |
acacagtacttttgtacttgtccattcgtgttctgaagaagttttctggcttctggaaccagaaataatctaacctgtctgataag |
37001618 |
T |
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